Locus 1258

Sequence ID 2R_DroMel_CAF1
Location 4,911,341 – 4,911,441
Length 100
Max. P 0.887423
window2181

overview

Window 1

Location 4,911,341 – 4,911,441
Length 100
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 72.10
Mean single sequence MFE -24.48
Consensus MFE -5.70
Energy contribution -8.02
Covariance contribution 2.32
Combinations/Pair 1.12
Mean z-score -1.93
Structure conservation index 0.23
SVM decision value 0.95
SVM RNA-class probability 0.887423
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4911341 100 + 20766785
UCAUAGCAAGAAUAGG--GGCAAACAGAAGCAUCAAGGCAAAAGCAAACCCAAUUCCAUGGAGGUGGACGAGGUGAUA----GAGGAAACUA---AAAGUUUGCCCUAC
..............((--(((((((.....((((...((....))....(((.(((....))).)))....))))...----.((....)).---...))))))))).. ( -28.50)
>DroVir_CAF1 474 100 + 1
UCAAGAAAAGAUCACUAAAACAAAGAGUCGCAAGAAGAAAGAU-----GCGGAUGCCAUGGAUGUGGAUAAUGUGCCAUCAU----CCAACGUGGGUAAACUUCCUUAC
...........................((....))........-----..(((((((.(((((((((........))).)))----))).....))))....))).... ( -18.80)
>DroSec_CAF1 438 100 + 1
UCAUAGCAAGAAUAGU--GGAAAACAGAAGCAUCAAGCCAAAAGCAAACCCAACUCCAUGGAGGUGGACGAGGUGACA----GAGGAAACUA---AAAGUUUGCCCUAC
............(((.--((.((((....(((((..((.....))....(((.(((....))).)))....)))).).----.((....)).---...)))).))))). ( -21.20)
>DroSim_CAF1 438 100 + 1
UCAUAGCAAGAAUAGU--GGCAAACAGAAGCAUCAAGCCAAAAGCAAACCCAACUCCAUGGAGGUGGACGAGGUGACA----GAGGAAACUA---AAAGUUUGCCCUAC
............(((.--(((((((....(((((..((.....))....(((.(((....))).)))....)))).).----.((....)).---...)))))))))). ( -27.80)
>DroYak_CAF1 438 100 + 1
UCAGGGCAAGAAUAGA--GGCAAACAGAAGCAUCAACCCAAAAGCAAACACAACUCUAUGGAGGUGGACGAGGUGCCC----GUCGAAUCUA---GAAAUUUGCCCUAC
..((((((((..((((--..(...........................(((..(((....))))))((((.(....))----))))..))))---....)))))))).. ( -26.10)
>consensus
UCAUAGCAAGAAUAGU__GGCAAACAGAAGCAUCAAGCCAAAAGCAAACCCAACUCCAUGGAGGUGGACGAGGUGACA____GAGGAAACUA___AAAGUUUGCCCUAC
..................(((((((........................((...(((((....)))))...))..........((....)).......))))))).... ( -5.70 =  -8.02 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:16 2006