Locus 1256

Sequence ID 2R_DroMel_CAF1
Location 4,908,120 – 4,908,212
Length 92
Max. P 0.984204
window2177

overview

Window 7

Location 4,908,120 – 4,908,212
Length 92
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 75.24
Mean single sequence MFE -13.29
Consensus MFE -2.58
Energy contribution -2.78
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.32
Structure conservation index 0.19
SVM decision value 1.97
SVM RNA-class probability 0.984204
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4908120 92 - 20766785
AUCCCUGAAAAACAUUUUCAAUACAAUAUUGUAUUUUUACAAACAAAUUGUU---UAUUUUUCGGGGACCACACAUCACACACUCAGUAAACUUU
.(((((((((((.......((((((....)))))).....((((.....)))---).)))))))))))........................... ( -17.40)
>DroSec_CAF1 41350 95 - 1
AUCCCUUAAAACAUUUUUAAAUACAAUAUUGUAUUUUUACAAACAAAUUGGUGACUGUUUUUUGGGGACCACACUUUACAUACUCUGUAAACUUU
.(((((.((((((.....(((((((....))))))).............(....)))))))..)))))......((((((.....)))))).... ( -17.50)
>DroSim_CAF1 59953 95 - 1
AUCCCUUAAAACAUUUUUAAAUACAAUAUUGUAUUUUUACAAACAAAUUGGUGACUAUUUUUUGGGGACCGCACUUCACACACUCUGUAAACUUU
.((((.............(((((((....)))))))...((((.((((.(....).))))))))))))........................... ( -13.30)
>DroEre_CAF1 55959 82 - 1
AUCCCUCAUAACAUUUUAAAAUACAAGAUUGUAUUUUUACAAGCUGAUCAGUGUCUACUUUUUGG-------------CUUACUCAGUAUACUUC
.................((((((((....))))))))...((((..(..(((....)))..)..)-------------))).............. ( -11.50)
>DroYak_CAF1 60632 80 - 1
AUCCCUUAUAACAUUUUUAAAUACAAGAUUGUAUUUUAACAAACACUUUGGACUC--UUUUUUUG-------------CUUACUCUGUAAACUUC
.(((..............(((((((....))))))).............)))...--....((((-------------(.......))))).... (  -6.73)
>consensus
AUCCCUUAAAACAUUUUUAAAUACAAUAUUGUAUUUUUACAAACAAAUUGGUGACUAUUUUUUGGGGACC_CAC_U_ACAUACUCUGUAAACUUU
..................(((((((....)))))))........................................................... ( -2.58 =  -2.78 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:12 2006