Locus 1255

Sequence ID 2R_DroMel_CAF1
Location 4,906,597 – 4,906,717
Length 120
Max. P 0.709204
window2176

overview

Window 6

Location 4,906,597 – 4,906,717
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.17
Mean single sequence MFE -48.60
Consensus MFE -35.78
Energy contribution -36.38
Covariance contribution 0.60
Combinations/Pair 1.06
Mean z-score -2.00
Structure conservation index 0.74
SVM decision value 0.37
SVM RNA-class probability 0.709204
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4906597 120 - 20766785
CGAAUGGUGGCUUGGAUGAGGCCAUCCGUUUGAGGAUCCACAUUGGCCGUUGCCUCGUCCAUAACAAGGAUGCGAUUCUCUCGCAGAAUGGCUCUGGCCAGGCAGACCAACUGGCGCUGA
(((((((((((((.....)))))).)))))))..........(((((((..(((..((((.......))))((((.....)))).....)))..))))))).(((.((....))..))). ( -44.10)
>DroSec_CAF1 39838 120 - 1
CGAAUGGUUGCUUGGAUGAGGCCAUCCGUUUGGAGAUCCACAUUGGCCGUGGCCUCGUCCAUCACAAGGAUGCGAUUCUCUCGCAGAAUUGCUCUGGCCAGGCAGACCAACUGGCGCUGA
.........((.((((((((((((((((..(((....)))...)))..)))))))))))))......(((.((((((((.....))))))))))).(((((.........)))))))... ( -49.30)
>DroSim_CAF1 58443 120 - 1
CGAAUGGUGGCUUGGAUGAGGCCAUCCGUUUGGGGAUCCACAUUGGCCGUGGCCUCGUCCAUCACCAGGAUGCGAUUCUCUCGCAGAAUGGCUCUGGCCAGGCAGACCAACUGGCGCUGA
....((((((..((((((((((((((((..(((....)))...)))..)))))))))))))))))))(((.((.(((((.....))))).))))).(((((.........)))))..... ( -53.30)
>DroEre_CAF1 54409 120 - 1
CGAAUGGUGGCUUGGAUGAGGCCAUCUGUCUGCGGAUCCACAUUGGCAGUGGCCUCGUCCAUCACGAGAAUGCGGUUCUCACGCAGUAUGGCCCUGGCCAAGCAGAGCAACUGGCGCUGA
......((((..((((((((((((.(((((((.(....).))..)))))))))))))))))))))((((((...))))))..((.((.((((....)))).))...((.....))))... ( -51.20)
>DroYak_CAF1 59032 120 - 1
CGAAUAGUGGCUUGAAUGAGGCCAUCUGUGUGCGAAUCCACAUUGGCAGUAGCCUCGUCCAUCACAAGAAUGCGAUUCUCGCGCAGAAUGGCCCUGGCCAAGCAGACCAACUGGCGCUGA
....((((((((((..(..(((((((((((((.(((((..(((((((....)))..((.....))...)))).))))).))))))).))))))..)..)))))...((....))))))). ( -45.10)
>consensus
CGAAUGGUGGCUUGGAUGAGGCCAUCCGUUUGCGGAUCCACAUUGGCCGUGGCCUCGUCCAUCACAAGGAUGCGAUUCUCUCGCAGAAUGGCUCUGGCCAGGCAGACCAACUGGCGCUGA
....(((((.(.((((((((((((((((..((......))...)))..))))))))))))).....((..((((.......))))(..((((....))))..).......))).))))). (-35.78 = -36.38 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:11 2006