Locus 1251

Sequence ID 2R_DroMel_CAF1
Location 4,895,665 – 4,895,768
Length 103
Max. P 0.852379
window2167

overview

Window 7

Location 4,895,665 – 4,895,768
Length 103
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 94.97
Mean single sequence MFE -29.00
Consensus MFE -25.88
Energy contribution -25.88
Covariance contribution 0.00
Combinations/Pair 1.06
Mean z-score -1.39
Structure conservation index 0.89
SVM decision value 0.79
SVM RNA-class probability 0.852379
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4895665 103 - 20766785
UUGGCAAAAGAAUUCUCGCUGCAAAAUGGCGAAAAGUUCCCAAAAGGUGUUUAACAGGUCGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCA-GCGG
...((..........(((((.......)))))...((((((...((.(((((((.....(....)..))))))).)).))))))))..((((((...))-)))) ( -29.20)
>DroSec_CAF1 28905 103 - 1
UGGGCAAAAGAAUUCUCGCUGCAGAAUGGCGAAAAGUUCGCAAAAGGUGUUUAACAGGUCGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCA-GCGG
...((....(((((.(((((.......)))))..)))))......(((((..(((((...(((..((((((....))))))..)))..)))))))))).-)).. ( -29.50)
>DroSim_CAF1 47540 103 - 1
UGGGCAAAAGAAUUCUCGCUGCAGAAUGGCGAAAAGUUCGCAAAAGGUGUUUAACAGGUCGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCA-GCGG
...((....(((((.(((((.......)))))..)))))......(((((..(((((...(((..((((((....))))))..)))..)))))))))).-)).. ( -29.50)
>DroEre_CAF1 43038 102 - 1
UGGGCAAAAGAAUUCCCGCUG-AAAAUGGCGAAAAGUUUCCUAAAGGUGUUUAACAGGUCGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCA-GAGG
(((((((.((.((((((((((-(((((.((((...(((.((....)).....)))...))))..)))))...))))..))))))....)).)))).)))-.... ( -28.60)
>DroYak_CAF1 47768 104 - 1
UGGGCAAAAGAAUUCUCGCUGCAAAAUAGCGAAAAGUUUCCUAAAGGUGUUUAACAGGUAGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCAAGCGG
((((.(((....((.((((((.....)))))).)).)))))))..(((((..(((((...(((..((((((....))))))..)))..))))))))))...... ( -28.20)
>consensus
UGGGCAAAAGAAUUCUCGCUGCAAAAUGGCGAAAAGUUCCCAAAAGGUGUUUAACAGGUCGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCA_GCGG
...((....(((((.(((((.......)))))..)))))......(((((..(((((...(((..((((((....))))))..)))..))))))))))..)).. (-25.88 = -25.88 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:03 2006