Locus 125

Sequence ID 2R_DroMel_CAF1
Location 1,387,121 – 1,387,229
Length 108
Max. P 0.651218
window264

overview

Window 4

Location 1,387,121 – 1,387,229
Length 108
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 74.38
Mean single sequence MFE -40.07
Consensus MFE -26.57
Energy contribution -30.13
Covariance contribution 3.56
Combinations/Pair 1.06
Mean z-score -1.38
Structure conservation index 0.66
SVM decision value 0.25
SVM RNA-class probability 0.651218
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1387121 108 + 20766785
GCUGGGUGUGUGCCUGAGUGGGAGCCAGUGCUCCGCAGGACUGGAGCUAUUGCUCCUGCUGGGGUGAGUGCCAUGUGCGAGUCUGUUUGCGCUGGGACUUAAAUGGCC
(((........((((.((..(((((.(((((((((......)))))).))))))))..)).))))((((.(((.(((((((....)))))))))).))))....))). ( -50.60)
>DroSim_CAF1 18925 96 + 1
GCU------------GAGUGGGUGCCACAGCUCCGCAGGACUGGAGCUCCUGCUCCUGUUGGGGUGAGUGCCAUGUGCGAGUCUGUUUGCGCUGGGACUUAAAUGGCC
(((------------..((((...)))).((((((((((((.((....)).).))))).))))))((((.(((.(((((((....)))))))))).))))....))). ( -39.30)
>DroYak_CAF1 10097 92 + 1
GAUGGGUGUGUGCCGGAGUGGGUGUCUGAGC----------UGGAGCU------CUUGCUGGUGUGAGUGCCAUGAGCGAGUCUGGUUGCGCUGGGACUUAUAUGGCC
...((.((((((((......)))((((.(((----------.(.((((------((((((.(((.(....)))).))))))...)))).)))).))))..))))).)) ( -30.30)
>consensus
GCUGGGUGUGUGCC_GAGUGGGUGCCAGAGCUCCGCAGGACUGGAGCU__UGCUCCUGCUGGGGUGAGUGCCAUGUGCGAGUCUGUUUGCGCUGGGACUUAAAUGGCC
...........(((..((..((.((...(((((((......)))))))...)).))..))....(((((.(((.(((((((....)))))))))).)))))...))). (-26.57 = -30.13 +   3.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:02 2006