Locus 1246

Sequence ID 2R_DroMel_CAF1
Location 4,881,623 – 4,881,726
Length 103
Max. P 0.969497
window2161

overview

Window 1

Location 4,881,623 – 4,881,726
Length 103
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 76.33
Mean single sequence MFE -18.55
Consensus MFE -16.65
Energy contribution -16.40
Covariance contribution -0.25
Combinations/Pair 1.27
Mean z-score -1.93
Structure conservation index 0.90
SVM decision value 1.64
SVM RNA-class probability 0.969497
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4881623 103 - 20766785
UUUCUAAUUCGUUGCGUAUUGUGUUUUAUUUCGUUAUAUUUCAAAUUUAGAAUACCUAACGAAAUGUAAGUACAAGCGCAAAAU-CAAA-AGACUAAAGACUGG----U
..(((......((((((.((((((((((((((((((...(((.......)))....)))))))))).))))))))))))))...-....-)))...........----. ( -21.72)
>DroVir_CAF1 46000 99 - 1
CAUCUAGUGCCUUGUGCAUUGUAUUUUGUUUCGUUAUAUUUCAAAUUUAGAAAACCUCGCGAAAUGUAAGUACAAGUAUAAACAAAAAA-UGACCAAAAG---------
(((....((..((((((.((((((((((((((((....((((.......)))).....)))))))).)))))))))))))).))....)-))........--------- ( -19.00)
>DroPse_CAF1 13940 109 - 1
UAUCUAAUGCCGUGUGUAUUGUAUUUUGUUUCGUUAUAUUUCAAAUAUAGAAUACAAAACGAAAUGUAAGUACAAGCACAAACAACAAAUCUACCAAAAACCACAACAA
.......((...(((((.(((((((((((((((((....(((.......))).....))))))))).)))))))))))))..))......................... ( -19.50)
>DroGri_CAF1 46601 89 - 1
UAUCUAAUUCCGUGUCUAUUGAAUUUUGUUUCGUUAUAUUUCAAUUAUAGAAUACCUAACGAAAUGUAAGUACAAGCAUAAU-----------CCAAAAG---------
...........((((...(((.((((((((((((((...(((.......)))....)))))))))).)))).)))))))...-----------.......--------- ( -12.20)
>DroAna_CAF1 15244 101 - 1
UAUCUAAUGCCAUGUGUAUUGUGUUUUGUUUCGUUAUAUUUCAACUUUAGAAGACCUAAAGAAAUGUAAGUACAAGCACAAAAA-CAAU-GUUU--AAACUUGG----U
........((((.((...((((((((.((..(.(((((((((...(((((.....))))))))))))))).))))))))))(((-(...-))))--..)).)))----) ( -19.40)
>DroPer_CAF1 13964 109 - 1
UAUCUAAUGCCGUGUGUAUUGUAUUUUGUUUCGUUAUAUUUCAAAUAUAGAAUACAAAACGAAAUGUAAGUACAAGCACAAACAACAAAUCUACCAAAAACCACAACAA
.......((...(((((.(((((((((((((((((....(((.......))).....))))))))).)))))))))))))..))......................... ( -19.50)
>consensus
UAUCUAAUGCCGUGUGUAUUGUAUUUUGUUUCGUUAUAUUUCAAAUAUAGAAUACCUAACGAAAUGUAAGUACAAGCACAAACA_CAAA_CUACCAAAAAC________
............(((((.((((((((((((((((((...(((.......)))....)))))))))).)))))))))))))............................. (-16.65 = -16.40 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:57 2006