Locus 1244

Sequence ID 2R_DroMel_CAF1
Location 4,879,782 – 4,879,873
Length 91
Max. P 0.837010
window2159

overview

Window 9

Location 4,879,782 – 4,879,873
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 86.56
Mean single sequence MFE -30.48
Consensus MFE -23.04
Energy contribution -23.18
Covariance contribution 0.14
Combinations/Pair 1.17
Mean z-score -3.29
Structure conservation index 0.76
SVM decision value 0.74
SVM RNA-class probability 0.837010
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4879782 91 - 20766785
CCAUUUGCACCCGC--UUUUCCUGCUGGUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGGAAUGGAAUGCUGCUAUGCAUUUCUUAAACCA
..........((((--((((((.(((.(.((((((.....))))))).))))))))).))))...(((((((......)))))))........ ( -33.60)
>DroSec_CAF1 13010 90 - 1
-CAUUUUCUACCGC--UUUUCCUGCUGGUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGGAAUGGAAUGCUGCUAUGCAUUUCUUAAACCA
-.........((((--((((((.(((.(.((((((.....))))))).))))))))).))))...(((((((......)))))))........ ( -33.80)
>DroSim_CAF1 31614 90 - 1
-CAUUUUCUACCGC--UUUUCCUGCUGGUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGGAAUGGAAUGCUGCUAUGCAUUUCUUAAACCA
-.........((((--((((((.(((.(.((((((.....))))))).))))))))).))))...(((((((......)))))))........ ( -33.80)
>DroEre_CAF1 27304 84 - 1
-CAU-UUCUCCCGC--UAUUCCUGCUGCUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGG-----AAUGCUGCCAUGCAUUUCUUAAACCA
-...-.....((((--..((((.(((.(.((((((.....)))))).))))))))...))))-----(((((......))))).......... ( -24.90)
>DroYak_CAF1 31656 85 - 1
-AAUUUUCUCCCGC--UUUUCCUGCUGGUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGG-----AAUGCUGCUAUGCAUUUCUUAAACCA
-.........((((--((((((.(((.(.((((((.....))))))).))))))))).))))-----(((((......))))).......... ( -29.60)
>DroAna_CAF1 13178 88 - 1
ACAAUUUCCUUUGCAUCAUCCCUGCUGGUGCAUUCACAGCGAGUGCCGAGCAGAAAAUGUGG-----AAUGCAGCUAUGCAUUUCUUAAACCA
............((((.....(((((.(.((((((.....))))))).)))))...))))((-----((((((....))))))))........ ( -27.20)
>consensus
_CAUUUUCUCCCGC__UUUUCCUGCUGGUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGG_____AAUGCUGCUAUGCAUUUCUUAAACCA
..........((((...(((((.(((.(.((((((.....))))))).))))))))..)))).....(((((......))))).......... (-23.04 = -23.18 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:55 2006