Locus 1243

Sequence ID 2R_DroMel_CAF1
Location 4,878,541 – 4,878,651
Length 110
Max. P 0.567393
window2158

overview

Window 8

Location 4,878,541 – 4,878,651
Length 110
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 84.47
Mean single sequence MFE -17.03
Consensus MFE -15.76
Energy contribution -15.76
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.77
Structure conservation index 0.93
SVM decision value 0.07
SVM RNA-class probability 0.567393
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4878541 110 - 20766785
CCAGCCACCCCCUGCAUCCUGCCCCUGCCUCUGCCGUCCACACCCCCAACUCGGCCGCAAGUAUUUCUGGGACCAAAUUAUUUUCAUAGCUUUAGCUUAAAAGCUGAAAA
.((((....(((.((.....))...(((....((((...............)))).))).........))).........((((...(((....))).)))))))).... ( -18.16)
>DroSec_CAF1 11761 89 - 1
CCAGCCCC---------------------CCUGCCGUCCGCACCCCCAACUCGGCCGCAAGUAUUUCUGGGACCAAAUUAUUUUCAUAGCUUUAGCUUAAAAGCUGAAAA
.((((..(---------------------((.((((...............))))(....).......))).........((((...(((....))).)))))))).... ( -16.46)
>DroSim_CAF1 30356 89 - 1
CCAGCCCC---------------------CCUGCCGUCCGCACCCCCAACUCGGCCGCAAGUAUUUCUGGGACCAAAUUAUUUUCAUAGCUUUAGCUUAAAAGCUGAAAA
.((((..(---------------------((.((((...............))))(....).......))).........((((...(((....))).)))))))).... ( -16.46)
>consensus
CCAGCCCC_____________________CCUGCCGUCCGCACCCCCAACUCGGCCGCAAGUAUUUCUGGGACCAAAUUAUUUUCAUAGCUUUAGCUUAAAAGCUGAAAA
((((............................((((...............))))(....).....))))................(((((((......))))))).... (-15.76 = -15.76 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:54 2006