| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,851,032 – 4,851,134 |
| Length | 102 |
| Max. P | 0.880765 |
| Location | 4,851,032 – 4,851,134 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 83.33 |
| Mean single sequence MFE | -32.52 |
| Consensus MFE | -23.53 |
| Energy contribution | -23.20 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.880765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4851032 102 + 20766785 GCCAAUCGAGGCAUGGUAAUGAGAAAAACAGUUUGGCAUGCCAACCGUCGGGUCAGUGGAAAGCCAUGAAAAGCGAUGGAAAGCGGUGGAA--------AAAUCUACCGA .........((((((.(((.............))).))))))..((((((..(((.(((....))))))....))))))....(((((((.--------...))))))). ( -33.32) >DroEre_CAF1 7521 110 + 1 GCCAAUCGAGGCAUGGUAAUGAGAAAAACAGUUUGGCAUGCCGACCGUCGGGUCAGUGGAAGGCCAUGGAAAGCGGUGGAAAGCGGUGGAAAGCGGUGGAAAGCUGCCGA .(((.(((.((((((.(((.............))).))))))..((..((..((.((((....)))).))...))..))....))))))....(((..(....)..))). ( -34.72) >DroYak_CAF1 11889 100 + 1 GCCAAUCGAGGCAUGGUAAUGAGAAAAACAGUUUGGCAUGCCAACCGUCGGGUCAGUGGAUAGCCAUGGAAAACGGUGGA----------AAGCGGUGAAAAGCUGCCUA .((......((((((.(((.............))).)))))).(((((....((.((((....)))).))..))))))).----------..(((((.....)))))... ( -29.52) >consensus GCCAAUCGAGGCAUGGUAAUGAGAAAAACAGUUUGGCAUGCCAACCGUCGGGUCAGUGGAAAGCCAUGGAAAGCGGUGGAAAGCGGUGGAAAGCGGUG_AAAGCUGCCGA (((......)))..((((..............((((....))))((((((..((.((((....)))).))...)))))).........................)))).. (-23.53 = -23.20 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:42 2006