| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,839,594 – 4,839,696 |
| Length | 102 |
| Max. P | 0.836101 |
| Location | 4,839,594 – 4,839,696 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 94.77 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -25.47 |
| Energy contribution | -25.80 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836101 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4839594 102 + 20766785 CGCACUUUCCGCGCUUUCCUUUCGCCUUUGCCAGCUGCUGGCGUCUAAACAGCUCCCCGGCUAAUUAAUCUUAUUUUGGCAUUUGGGCUGGGAAUUUUCGCA ..........(((..((((...((((...((.....)).))))......((((((....(((((...........)))))....))))))))))....))). ( -28.80) >DroSim_CAF1 194 99 + 1 ---AUUUUCCGCGCUUUCCUUUCGCCUUUGCCAGCUGCUGGCGUCUAAACAGCUCCCCGGCUAAUUAAUCUUAUUUUGGCAUUUGGGCUGGGAAUUUUCGCA ---.......(((..((((...((((...((.....)).))))......((((((....(((((...........)))))....))))))))))....))). ( -28.80) >DroYak_CAF1 503 102 + 1 CGCGUUUUCCCCGCUUUCCUUUCGCCUUUGCCAGCUGCUAGCAUCUAAACAGCUCCCCGGCUAAUUAAUCUUAUUUUGGCAUUUGGGCUGGGAAUUUUCGCA .(((..(((((.(.....)....((((.(((((((.....))........((((....))))..............)))))...)))).)))))....))). ( -26.60) >consensus CGCAUUUUCCGCGCUUUCCUUUCGCCUUUGCCAGCUGCUGGCGUCUAAACAGCUCCCCGGCUAAUUAAUCUUAUUUUGGCAUUUGGGCUGGGAAUUUUCGCA ..........(((..(((((...((((.(((((((.....))........((((....))))..............)))))...)))).)))))....))). (-25.47 = -25.80 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:29 2006