Locus 1218

Sequence ID 2R_DroMel_CAF1
Location 4,829,315 – 4,829,418
Length 103
Max. P 0.586595
window2121

overview

Window 1

Location 4,829,315 – 4,829,418
Length 103
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 80.16
Mean single sequence MFE -47.08
Consensus MFE -30.82
Energy contribution -30.86
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.64
Structure conservation index 0.65
SVM decision value 0.11
SVM RNA-class probability 0.586595
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4829315 103 + 20766785
UUGGUGAAUUGG--CCGAAG---------CACAGCCUC------UGCGUUGGAGUUCAUGAGGGCCUCAUGCCCGUCCAAUGGACGGGGGUGUCCCUACUGAACGAAUGCGCCUUCUUUC
..((((.(((..--((((.(---------((.......------))).)))).(((((..((((...(((.(((((((...))))))).))).))))..))))).))).))))....... ( -40.80)
>DroPse_CAF1 1166 120 + 1
UUGGGGGGGCGACGACGACGGUUACUCUCGACAGCAUCCUCGUGGGCGUUGGAGUUCAUGAGGGCCGCAUGCCGGUGUAGUGGACCGGGGUGUCUCUGCUGAAGGAGUGCGCCUUCUUUC
..(((((((((.((....))..(((((.(..((((((((((((((((......)))))))))))..((((.(((((.......))))).))))...)))))..))))))))))))))).. ( -53.60)
>DroEre_CAF1 5216 103 + 1
UUGGUGAAAUGG--CCGAAG---------CACAGCCUC------UGCGUUGGAGUUCAUGAGGGCCGCAUGCCCGUCCAGUGGACGGGGGUGUCCCUGCUGAACGAAUGCGCCUUCUUUC
..((((......--((((.(---------((.......------))).)))).(((((..((((..((((.(((((((...))))))).))))))))..))))).....))))....... ( -41.80)
>DroYak_CAF1 1011 103 + 1
UUGGUGAAAUGG--CCGAAG---------CACAGCCUC------UGCGUUGGAGUUCAUGAGGGCCGCAUGCCCGUCCAGUGGACGGGCGUGUCCCUGCUGAACGAAUGCGCCUUCUUUC
..((((......--((((.(---------((.......------))).)))).(((((..((((..((((((((((((...))))))))))))))))..))))).....))))....... ( -45.60)
>DroPer_CAF1 5053 120 + 1
UUGGGGGGGCGACGACGACGGUUACUCUCGACAGCAUCCUCGUGGGCGUUGGAGUUCAUGAGGGCCGCAUGCCGGUGUAGUGGACCGGGGUGUCUCUGCUGAAGGAGUGCGCCUUCUUUC
..(((((((((.((....))..(((((.(..((((((((((((((((......)))))))))))..((((.(((((.......))))).))))...)))))..))))))))))))))).. ( -53.60)
>consensus
UUGGUGAAAUGG__CCGAAG_________CACAGCCUC______UGCGUUGGAGUUCAUGAGGGCCGCAUGCCCGUCCAGUGGACGGGGGUGUCCCUGCUGAACGAAUGCGCCUUCUUUC
.............................................((((....(((((..((((..((((.(((((((...))))))).))))))))..)))))....))))........ (-30.82 = -30.86 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:19 2006