| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,824,153 – 4,824,250 |
| Length | 97 |
| Max. P | 0.981638 |
| Location | 4,824,153 – 4,824,250 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 94.01 |
| Mean single sequence MFE | -16.94 |
| Consensus MFE | -14.62 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4824153 97 + 20766785 GCACUUCGGAGUGCUCCAUCCUCAAUUAUUUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUCCUUUCUGUUAUUCUUUGUAGCAUUUGUGCG ((((....(((((((.((.....(((((.....)))))((((...((....))..(((....))).......))))......)).))))))))))). ( -13.80) >DroSec_CAF1 14837 95 + 1 GCACUUCGGAGUGCUCCAUCCUCAUUUAUUUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUACU--CUGUUAUUCUUUGUAGCAUUUGUGCG ((((...(((((((..........................(((......)))....((....)))))))--))(((((.....)))))....)))). ( -17.80) >DroSim_CAF1 17103 97 + 1 GCACUUCGGAGUGCUCCAUCCUCAUUUAUUUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUACUCUCUGUUAUUCUUUGUAGCAUUUGUGCG ((((...(((((((..........................(((......)))....((....))))))))).((((((.....))))))...)))). ( -17.80) >DroEre_CAF1 15746 96 + 1 GCACUUCGGAGUGCUCCAUCCUCUUUA-AAUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUACUCUCUGUUAUUCUUUGUAGCAUUUGUGCG ((((...(((((((.............-............(((......)))....((....))))))))).((((((.....))))))...)))). ( -17.80) >DroYak_CAF1 17081 95 + 1 GCACUUCGGAGUGCUCCAUUCUCAUUU--AUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUACUCUCCGUUAUUCUUUGUAGCAAUUGUGCG ((((...(((((((.............--...........(((......)))....((....)))))))))..(((((.....)))))....)))). ( -17.50) >consensus GCACUUCGGAGUGCUCCAUCCUCAUUUAUUUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUACUCUCUGUUAUUCUUUGUAGCAUUUGUGCG ((((...(((((((..........................(((......)))....((....)))))))))..(((((.....)))))....)))). (-14.62 = -15.10 + 0.48)
| Location | 4,824,153 – 4,824,250 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 94.01 |
| Mean single sequence MFE | -15.52 |
| Consensus MFE | -14.94 |
| Energy contribution | -14.78 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981638 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4824153 97 - 20766785 CGCACAAAUGCUACAAAGAAUAACAGAAAGGACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAAAUAAUUGAGGAUGGAGCACUCCGAAGUGC .((((...............((((((......(((....)))..((....))..))))))...................((((....))))..)))) ( -15.10) >DroSec_CAF1 14837 95 - 1 CGCACAAAUGCUACAAAGAAUAACAG--AGUACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAAAUAAAUGAGGAUGGAGCACUCCGAAGUGC .((((...............((((((--....(((....)))..((....))..))))))...................((((....))))..)))) ( -15.10) >DroSim_CAF1 17103 97 - 1 CGCACAAAUGCUACAAAGAAUAACAGAGAGUACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAAAUAAAUGAGGAUGGAGCACUCCGAAGUGC .((((...............((((((......(((....)))..((....))..))))))...................((((....))))..)))) ( -15.10) >DroEre_CAF1 15746 96 - 1 CGCACAAAUGCUACAAAGAAUAACAGAGAGUACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAUU-UAAAGAGGAUGGAGCACUCCGAAGUGC .((((...............((((((......(((....)))..((....))..)))))).........-.........((((....))))..)))) ( -15.10) >DroYak_CAF1 17081 95 - 1 CGCACAAUUGCUACAAAGAAUAACGGAGAGUACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAU--AAAUGAGAAUGGAGCACUCCGAAGUGC .((((.....((....)).....(((((.((.(((....)))............(((((......)))--))...........)).)))))..)))) ( -17.20) >consensus CGCACAAAUGCUACAAAGAAUAACAGAGAGUACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAAAUAAAUGAGGAUGGAGCACUCCGAAGUGC .((((...............((((((......(((....)))..((....))..))))))...................((((....))))..)))) (-14.94 = -14.78 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:13 2006