Locus 1214

Sequence ID 2R_DroMel_CAF1
Location 4,821,184 – 4,821,286
Length 102
Max. P 0.570849
window2113

overview

Window 3

Location 4,821,184 – 4,821,286
Length 102
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -14.32
Consensus MFE -11.75
Energy contribution -11.95
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.82
SVM decision value 0.07
SVM RNA-class probability 0.570849
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4821184 102 - 20766785
GCAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCAUCAAGCAAAGCAAGAAAUGUUGAAUCGAAAGAAAAAGUCAAACAAAGCCAU-
((....(((((.(((.....))).)))))......(((((((((((..................)))))))))))((....))..............))...- ( -13.67)
>DroSec_CAF1 11898 102 - 1
GCAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCUUCAAGCUAAGCAAGAAAUGUUGAAUCGAAAGAAAAAGUCAAACAAAGCCAU-
((....(((((.(((.....))).)))))......(((((((((((...(((......)))...)))))))))))((....))..............))...- ( -15.20)
>DroSim_CAF1 14117 103 - 1
GCAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCAUCAAGCAAAGCAAGAAAUGUUGAAUCGAAAGAAAAAGUCAAACAAAGCCAUA
((....(((((.(((.....))).)))))......(((((((((((..................)))))))))))((....))..............)).... ( -13.67)
>DroEre_CAF1 12784 97 - 1
GGAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCAUCAAG-----CAAGAAAUGUUGAAUCGAAAGAAAAAGUCAAGCAAAGCCAU-
((....(((((.(((.....))).)))))...((.(((((((((((..........-----...)))))))))))((....)).........))....))..- ( -16.42)
>DroYak_CAF1 14123 97 - 1
GCAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCAUCAAA-----CAAGAAAUGUUGAAUCGAAACAAAAAGUCAAACAAAGCCAU-
((....(((((.(((.....))).)))))..((..(((((((((((..........-----...))))))))))).))...................))...- ( -12.62)
>consensus
GCAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCAUCAAGC_AAGCAAGAAAUGUUGAAUCGAAAGAAAAAGUCAAACAAAGCCAU_
......(((((.(((.....))).)))))...((.(((((((((((..................)))))))))))((....))..............)).... (-11.75 = -11.95 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:11 2006