| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,806,090 – 4,806,181 |
| Length | 91 |
| Max. P | 0.623035 |
| Location | 4,806,090 – 4,806,181 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 89.46 |
| Mean single sequence MFE | -20.44 |
| Consensus MFE | -15.42 |
| Energy contribution | -16.34 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.623035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4806090 91 + 20766785 AUUGAACGCCGUUGAUUGGAAGUAAAUGUUUACAAAAUCAAACUGAUGGGAUCUUAU-----GAAAUGCUGGUAAAGCGUUUCGAGGGAGAAGGUG ......((((.((((((....((((....))))..))))))..........(((..(-----((((((((.....)))))))))..)))...)))) ( -23.20) >DroSec_CAF1 17399 91 + 1 AUUGAACGCCGUUGAUUGGAAGUAAAUGUUUACAAAAUCAAACUGAUGGGAUCUUAU-----GGAAUGCUGGUAAAGCGUUUCGAGGGAGAAGGUG ......((((.((((((....((((....))))..))))))..........(((..(-----((((((((.....)))))))))..)))...)))) ( -22.70) >DroSim_CAF1 17363 91 + 1 AUUGAACGCCGUUGAUUGGAAGUAAAUGUUUACAAAAUCAAACUGAUGGGAUCUUAU-----GGAAUGCUGGUAAAGCGUUUCGAGGGAGAAGGUG ......((((.((((((....((((....))))..))))))..........(((..(-----((((((((.....)))))))))..)))...)))) ( -22.70) >DroEre_CAF1 17323 96 + 1 AUUGAACGCCGUUGAUUGGAAGUAAAUAUUUACAAAAUCAAAUUGAUGGGAUCUUAUGGAAUUGAAUGCUGGUAAAGCGUUUCGAGGGAGAAGGUG ........((((..(((.((.((((....))))....)).)))..)))).(((((......(((((((((.....)))).))))).....))))). ( -19.40) >DroYak_CAF1 15065 86 + 1 AUUGAACGCCGUUGAUUGAAAGUAAAUAUUUACUAAAUCAAAACGAUAGGAUCUUAU-----UUAAUGAUG-----ACGUUUCGAGGGGAAAGGUG ......((((.((((((...(((((....))))).))))))..(((...(((.((((-----(....))))-----).))))))........)))) ( -14.20) >consensus AUUGAACGCCGUUGAUUGGAAGUAAAUGUUUACAAAAUCAAACUGAUGGGAUCUUAU_____GGAAUGCUGGUAAAGCGUUUCGAGGGAGAAGGUG ......((((.((((((....((((....))))..))))))..........((((.......((((((((.....))))))))....)))).)))) (-15.42 = -16.34 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:00 2006