| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,783,157 – 4,783,253 |
| Length | 96 |
| Max. P | 0.774025 |
| Location | 4,783,157 – 4,783,253 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -21.17 |
| Consensus MFE | -15.97 |
| Energy contribution | -15.65 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4783157 96 + 20766785 AAAAACUAACACAACA---UACUUGAAUAAUCAGCAUAUAAUACGCG-AUAUAGCGACAUGUUUAUUAUACGUCGGGAUUCGGUGCGGUUGCAUUGAGAC ................---..((((((((((.(((((......(((.-.....)))..))))).)))))...))))).((((((((....)))))))).. ( -18.30) >DroSec_CAF1 5812 95 + 1 -ACAACUGACACAACA---UACUUGAAUAAUCAGCAUAUAAUACGCG-AUAUAGCGACAUGUUCAUUAUACGUCGGGAUUCGGUGCGGUUGCAUUGAAAC -....(((((....((---....)).(((((.(((((......(((.-.....)))..))))).)))))..)))))..((((((((....)))))))).. ( -21.80) >DroSim_CAF1 5216 95 + 1 -ACAACUGACACAACA---UACUUGAAUAAUCAGCAUAUAAUACGCG-AUAUAGCGACAUGUUCAUUAUACGUCGGGAUUCGGUGCGGUUGCAUUGAGAC -....(((((....((---....)).(((((.(((((......(((.-.....)))..))))).)))))..)))))..((((((((....)))))))).. ( -21.50) >DroEre_CAF1 5980 90 + 1 --AAACUGACA--ACA---UACUUGAAUAAUCAGCA--UAAUACGCU-AUAUAGCGACAUGUUCAUUAUACGUCGGGACUCGGUGUGGUUGCAUUGAGAC --...(((((.--.((---....)).(((((.((((--(....((((-....))))..))))).)))))..)))))..((((((((....)))))))).. ( -24.20) >DroYak_CAF1 5974 79 + 1 --AAACUGACA----------------CAAUCAGCA--UAAUACGCG-AUAUAGCGACAUGUUCAUUAUACGUCGGGAUUCGGUGUGGUUGCAUUGAGAC --...(((((.----------------.(((.((((--(....(((.-.....)))..))))).)))....)))))..((((((((....)))))))).. ( -18.30) >DroAna_CAF1 5549 83 + 1 -AUUCCCGGCACAACACAACACUUGAAUAAUCAGCA--UAAUACGCGAAUAUAGCGACAUGUUCAUUAUACGCCGGGAUUC--------------AAGAC -..(((((((.(((........))).(((((.((((--(....(((.......)))..))))).)))))..)))))))...--------------..... ( -22.90) >consensus _AAAACUGACACAACA___UACUUGAAUAAUCAGCA__UAAUACGCG_AUAUAGCGACAUGUUCAUUAUACGUCGGGAUUCGGUGCGGUUGCAUUGAGAC .....(((((.................................(((.......)))....((.......)))))))..((((((((....)))))))).. (-15.97 = -15.65 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:53 2006