Locus 1202

Sequence ID 2R_DroMel_CAF1
Location 4,758,805 – 4,758,902
Length 97
Max. P 0.594410
window2091

overview

Window 1

Location 4,758,805 – 4,758,902
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 81.50
Mean single sequence MFE -21.61
Consensus MFE -10.02
Energy contribution -13.24
Covariance contribution 3.22
Combinations/Pair 1.09
Mean z-score -2.72
Structure conservation index 0.46
SVM decision value 0.12
SVM RNA-class probability 0.594410
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4758805 97 + 20766785
-ACCACUGCACUUCACGAGUUGACUUCUUAAUGGGCCAAAAAUAGAAAUCCACUUGGCCAACUCACACACACACACUGGCGUACCGCCAGCAGUAACC
-...(((((.......(((((..(........)((((((....(....)....)))))))))))............(((((...)))))))))).... ( -25.70)
>DroSec_CAF1 38765 95 + 1
-ACCACUGCACUUCACGAGUUGCCUUCUUAAUGGGCCAAAAAUAGAAAUCCACUUGGUCAACUCACAC--ACACACUGGCGUACCGCCAGCAGUCACC
-...(((((.......((((((((........))(((((....(....)....)))))))))))....--......(((((...)))))))))).... ( -24.30)
>DroSim_CAF1 39749 95 + 1
-ACCACUGCACUUCACGAGUUGCCUUCUUAAUGGGCCAAAAAUAGAAAUCCACUUGGCCAACUCACAC--ACACACUGGCGUACCGCCAGCAGUCACC
-...(((((.......((((((((........))(((((....(....)....)))))))))))....--......(((((...)))))))))).... ( -26.20)
>DroEre_CAF1 37882 92 + 1
-ACCACUGCACUUCUCGCGUUGGCUUCUUAAUGUGCCAAAAAUAGAAAUCCACUUGGCCAACUCACAC--ACACACUGGCAU---GCCAGCAGUCACC
-...(((((..((((....(((((..........)))))....)))).........((((........--......))))..---....))))).... ( -19.54)
>DroYak_CAF1 38541 87 + 1
-ACCACUGCACUUCACGAGUUGGCUUCUUAAUGGGCCAAAAAUAGAAAUCCACUUGGCCAACUCACAC--ACACACUGGC--------AGCAGUCACC
-...(((((.......(((((((((......((((.............))))...)))))))))...(--(.....))..--------.))))).... ( -21.62)
>DroPer_CAF1 41233 84 + 1
GGCGACAGCCCUUCACACGCUGCCCU-UCAAUGGCGCUAAAAUAGAAAUCCACUUGGCCAACUCAACGUCAAACACUUGAAUA-------------AA
(((....))).((((...((.(((..-.....)))))................(((((.........))))).....))))..-------------.. ( -12.30)
>consensus
_ACCACUGCACUUCACGAGUUGCCUUCUUAAUGGGCCAAAAAUAGAAAUCCACUUGGCCAACUCACAC__ACACACUGGCGUA__GCCAGCAGUCACC
....(((((.......((((((((........))(((((..............)))))))))))............((((.....))))))))).... (-10.02 = -13.24 +   3.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:51 2006