Locus 1201

Sequence ID 2R_DroMel_CAF1
Location 4,758,383 – 4,758,474
Length 91
Max. P 0.540709
window2090

overview

Window 0

Location 4,758,383 – 4,758,474
Length 91
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 87.07
Mean single sequence MFE -21.26
Consensus MFE -15.59
Energy contribution -16.55
Covariance contribution 0.96
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.73
SVM decision value 0.01
SVM RNA-class probability 0.540709
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4758383 91 - 20766785
GGUCACUUUAUUAAAUGGCCUUCCACGCAUCCAUGGAAAUCGGACA-------GUUCACAGCUUCCAGCUCCCAGCGAUUAUCACACACGCUCGAACA
(((((.((....)).)))))(((((........)))))........-------((((..(((.....)))...((((...........)))).)))). ( -17.20)
>DroSec_CAF1 38335 98 - 1
GGUCACUUUAUUAAAUGACCUUCCACGCAUCCAUGGAAGUCGACCAGCUCCCAGCUCCCAGCUUCCAGCUCCCAGCGAUUAUCACACACGCUCGAGCA
(((((.((....)).))))).............(((((((.(...(((.....)))..).)))))))((((..((((...........)))).)))). ( -25.90)
>DroSim_CAF1 39320 98 - 1
GGUCACUUUAUUAAAUGACCUUCCACGCAUCCAUGGAAGUCGACCACCUCCCAGCUCCCAGCUUCCAGCUCCCAGCGAUUAUCACACACGCUCGAGCA
(((((.((....)).))))).............(((((((.((.(........).))...)))))))((((..((((...........)))).)))). ( -22.20)
>DroEre_CAF1 37457 84 - 1
GGUCACUUUAUUAAAUGGCCUUCCACGCAUCCAUGGAAGGCGCC--------------CAGCUCCCAGCGCCCAGCGAUUAUCACACACGCUCGAGCA
.................((((((((........))))))))...--------------..((((..((((....(.(.....).)...)))).)))). ( -22.30)
>DroYak_CAF1 38119 91 - 1
GGUCACUUUAUUAAAUGGCCUUACACGCAUCCAUGGAAGUCGCCCA-------GCACCCAGCUCCCAGCUCCCAGCGAUUAUCACACACGCUCGAGCA
(((.(((((.....((((............)))).))))).))).(-------((.....)))....((((..((((...........)))).)))). ( -18.70)
>consensus
GGUCACUUUAUUAAAUGGCCUUCCACGCAUCCAUGGAAGUCGACCA_______GCUCCCAGCUUCCAGCUCCCAGCGAUUAUCACACACGCUCGAGCA
(((((.((....)).))))).............(((((((.(................).)))))))((((..((((...........)))).)))). (-15.59 = -16.55 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:50 2006