| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,746,221 – 4,746,319 |
| Length | 98 |
| Max. P | 0.559669 |
| Location | 4,746,221 – 4,746,319 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.62 |
| Mean single sequence MFE | -35.40 |
| Consensus MFE | -24.74 |
| Energy contribution | -24.49 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4746221 98 - 20766785 ACUGAGCCGUCCGAAGGGUGGUGGCGACUCCAGCUCCAAGACCACCAGUCGCAAGGACAAGGGUGAGUG-------U------------GCGCCCGCACG---GCGGCCAGACACUGGCA .....(((((((...((.(((((((..............).)))))).))....))))..(((((....-------.------------.)))))....)---)).(((((...))))). ( -40.44) >DroVir_CAF1 40517 104 - 1 ACUGAGCCGUCCGAAAGGUGGUGGCGACUCCAGCUCAAAGACCACCAGUCGCAAGGACAAGGGUAAGGA-------UU------GAAAAGCAUUUGCAUA---GCGGCCAGACACUGGCA .(((.(((((((....(((((((((.......))).....)))))).(((.....)))..))(((((..-------((------....))..)))))...---))))))))......... ( -31.80) >DroGri_CAF1 39287 103 - 1 ACUGAGCCGUCCAAAGGGUGGCGGCGAUUCCAGCUCUAAGACCACCAGCCGCAAGGAUAAGGGUAAGCA-------UU------U-CAAGCAUUUACAUA---GCGGCCAGACACUGGCA .(((.(((((((....(((((((((.......)))....).)))))..((....))....))((((((.-------..------.-...))..))))...---))))))))......... ( -30.10) >DroWil_CAF1 35369 102 - 1 ACUGAGCCGUCCGAAAGGCGGUGGCGAUUCCAGUUCAAAGACCACCAGCCGCAAGGAUAAGGGUAAGUU-------U-----------GGCACUUACACGUAGCCGGCCAGACACUGGCA ..((.((((.((....))))))..))...(((((......(((.....((....)).....)))..(((-------(-----------(((..(((....)))...)))))))))))).. ( -36.20) >DroMoj_CAF1 40603 116 - 1 ACUGAGCCGUCCGAAAGGUGGUGGCGAUUCCAGUUCAAAGACCACCAGUCGCAAGGACAAGGGUAAGGAAAAUGC-UUGCAAAAGCAAAGCAUUUGCAUA---GACGCCAGACACUGGCA .(((.((.((((....(((((((((..............).)))))).))....))))...........((((((-((((....)).)))))))))).))---)..(((((...))))). ( -36.74) >DroPer_CAF1 28778 100 - 1 ACUGAGCCGUCCGAAAGGUGGUGGCGACUCCAGUUCCAAGACCACCAGUCGCAAGGACAAGGGUGAGUG-----UGU------------GCGCCCACAUA---GCGGCCAGACACUGGCA .((...((...(((..((((((((.(((....)))))...))))))..)))...))...)).((.((((-----(.(------------(.((((.....---).))))).))))).)). ( -37.10) >consensus ACUGAGCCGUCCGAAAGGUGGUGGCGACUCCAGCUCAAAGACCACCAGUCGCAAGGACAAGGGUAAGUA_______U___________AGCACUUACAUA___GCGGCCAGACACUGGCA .(((.(((((((....(((((((((.......))).....))))))..((....))....))(((((.........................)))))......))))))))......... (-24.74 = -24.49 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:48 2006