Locus 1191

Sequence ID 2R_DroMel_CAF1
Location 4,718,867 – 4,718,965
Length 98
Max. P 0.677423
window2080

overview

Window 0

Location 4,718,867 – 4,718,965
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 84.39
Mean single sequence MFE -22.78
Consensus MFE -16.32
Energy contribution -16.24
Covariance contribution -0.08
Combinations/Pair 1.19
Mean z-score -1.79
Structure conservation index 0.72
SVM decision value 0.30
SVM RNA-class probability 0.677423
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4718867 98 + 20766785
ACAAUUCCCGCAGUAAAAUCAUAACAAACAUUGUUUUCCUGCGGGACAGUGUGGCCGUGCUAGAACUGCGUAAAAUUACUAACUGGAAAGACUGAAAU
.....((((((((.(((((.((.......)).))))).))))))))((((.(..((..((.......))(((....))).....))..).)))).... ( -26.00)
>DroSec_CAF1 2149 98 + 1
ACAAUUCCCGCAGUAAAAUCAUAACAAACUUUGUUUUCCUGCGGGACAGUGUGGCCGUGCUACAGCUGCGUAAAAAUACUAAAUGGAAAGAAUAAAAU
.....((((((((.((((.((..........)))))).))))))))(((((((((...)))))).))).............................. ( -24.50)
>DroSim_CAF1 2149 98 + 1
ACAAUUCCCGCAGUAAAAUCAUAACAAACUUUGUUUUCCUGCGGGACAGUGUGGCCGUGCUACAGCUGCGUAAAAAUACUAAAUGGAAAGAAUAAAAU
.....((((((((.((((.((..........)))))).))))))))(((((((((...)))))).))).............................. ( -24.50)
>DroEre_CAF1 2154 98 + 1
AGAAUUCCCGCAGUAAAAUCAUAACAAACUUUGUUUUUCCUUGGGACAGUGUGGCCGUGGCAGCACUGCCUAAAAAUACUAGGUUAUAGAAGUUGAAC
...((..((..((((.......((((.....)))).....(((((.((((((.((....)).)))))))))))...)))).))..))........... ( -22.70)
>DroYak_CAF1 2157 92 + 1
ACAAUUCCCGCAGUAAAAUCAUAACAAACUUUGUUUUUCUUUGGGACAGUGUGGCCGUGCCAAAAUUGCGUUAAAAUACUAAUUGGCAA------AAA
(((..(((((.((.((((.((..........)).)))))).)))))...))).....(((((..((((.((......))))))))))).------... ( -16.20)
>consensus
ACAAUUCCCGCAGUAAAAUCAUAACAAACUUUGUUUUCCUGCGGGACAGUGUGGCCGUGCUACAACUGCGUAAAAAUACUAAAUGGAAAGAAUAAAAU
.....((((((((.((((.((..........)))))).))))))))((((..(((...)))...)))).............................. (-16.32 = -16.24 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:40 2006