| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,718,690 – 4,718,786 |
| Length | 96 |
| Max. P | 0.993571 |
| Location | 4,718,690 – 4,718,786 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 71.04 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -12.73 |
| Energy contribution | -13.07 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.55 |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.993571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4718690 96 - 20766785 CUGCGUCUCCAGUCCCGCCGGAAGCUGCUGGCGCUCACGAGUGAGUU--AC--CUUGCUCACCAGCCCCAUUACUUAACUA-AUG--UUC-----UUUUUUUUUCAAU ..(((((..((((((....))..))))..)))))....(.((((((.--..--...))))))).....(((((......))-)))--...-----............. ( -22.00) >DroSec_CAF1 1973 95 - 1 UUGCGUCUCCAGUCUCGCUUGAAGCUGCUGACGCUCACGAGUGAGUU--AC--CUCGCUCACCUUUCCUAUUACUUAACUA-AUU--UUC-----UUUUU-UUUCCAU ..(((((..(((..((....))..)))..)))))....(((((((..--..--))))))).....................-...--...-----.....-....... ( -24.90) >DroSim_CAF1 1973 95 - 1 CUGCGUCUCCAGUCUCGCUUGAAGCUGCUGACGCUCACGAGUGAUUU--AC--CUCGCUCACCUUUCCUAUUACUUAACUA-AUU--UUC-----UUUUU-UUUCUAU ..(((((..(((..((....))..)))..)))))....((((((...--..--.)))))).....................-...--...-----.....-....... ( -22.30) >DroEre_CAF1 1976 97 - 1 CUGCGACUGCAAUCCCGCCGGAAGCUGCUGGCGCUCAUGAGUGAGUU--CU--CUAGCUCACCUUUCCUAUUACUUAACAA-AUAACUAU-----UUUUC-GUUCAAC ..((((.........((((((......)))))).......((((((.--..--...))))))...................-........-----...))-))..... ( -19.40) >DroYak_CAF1 1973 103 - 1 CUGCGACUGCAGUCCCGCAGGAAGCUGCUGGCGCUCAUGAGUGAGUU--CA--CUCGCUCACCUUUCCUAUUACUUCACUAUACAACUUUAAUUGUCUUC-UUUAAAU ....(((((.(((.((((((....)))).)).)))))((((((((..--..--)))))))).................................)))...-....... ( -25.50) >DroPer_CAF1 1930 96 - 1 CUGAAGAUGCAGUCGCGCCGCAAGCUGCAGCUGUUUUCGGGUAGGAUCUAAUUUUUGGACACUUGUCAU----CUGGAAUA-AUC--GUA----GUUUUU-CUUACGU ((((((..(((((.(((.(....).))).)))))))))))((((((.(((..(((..((.........)----)..)))..-...--.))----)....)-))))).. ( -25.30) >consensus CUGCGUCUCCAGUCCCGCCGGAAGCUGCUGGCGCUCACGAGUGAGUU__AC__CUCGCUCACCUUUCCUAUUACUUAACUA_AUA__UUC_____UUUUU_UUUCAAU ..(((((..((((..........))))..)))))....(((((((........)))))))................................................ (-12.73 = -13.07 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:39 2006