Locus 1186

Sequence ID 2R_DroMel_CAF1
Location 4,711,839 – 4,711,943
Length 104
Max. P 0.880346
window2074

overview

Window 4

Location 4,711,839 – 4,711,943
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 90.37
Mean single sequence MFE -37.80
Consensus MFE -31.19
Energy contribution -31.33
Covariance contribution 0.14
Combinations/Pair 1.14
Mean z-score -2.51
Structure conservation index 0.83
SVM decision value 0.91
SVM RNA-class probability 0.880346
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4711839 104 - 20766785
GGCCACUUUGGGCCGUGCUAAAUCGCACAAAUUGGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCCGGUUGCCUGGAGUGGCCUCGACUUC
((((((((..(((.((((......)))).((((((((((...))))..))))))...((((.((((.......)))).)))).)))..))))))))........ ( -41.90)
>DroSec_CAF1 5298 104 - 1
GGCCACUUUGGGCCGUGCUAAAUCGCACAAAUUGGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCCGGUUGCCUGGAGUGGCCUCGACUUC
((((((((..(((.((((......)))).((((((((((...))))..))))))...((((.((((.......)))).)))).)))..))))))))........ ( -41.90)
>DroSim_CAF1 4607 104 - 1
GGCCACUUUGGGCCGUGCUAAAUCGCACAAAUUGGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCCGGUUGCCUGGAGUGGCCUCGACUUC
((((((((..(((.((((......)))).((((((((((...))))..))))))...((((.((((.......)))).)))).)))..))))))))........ ( -41.90)
>DroEre_CAF1 4992 103 - 1
GGCCACUUUGGGCCGUGUUAAAUCGCACAAAUUGGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCGGAGUCCUUGGAGUGGCC-CUGCUUC
((((((((..((..((((......)))).((((((((((...))))..))))))(((..((.((((.......))))))..)))))..))))))))-....... ( -36.90)
>DroYak_CAF1 4309 103 - 1
GGCCACUUUGGGCCGUGCUAAAUCGCACAAAUUAGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCGGAGUCCCUGGAGUGGCU-CUACUUC
((((((((..((..((((......)))).....((((((...))))))......(((..((.((((.......))))))..)))))..))))))))-....... ( -35.40)
>DroAna_CAF1 6399 98 - 1
GGCCACUUUCGGCCGUGCUAAAUCGCACAAAUUGGCAGUUUAAUUGUCCCAAUUGACAUUGAGGCAAGAUUUGUGCUCUGGGUCCCUUAAGUAC------CUUU
((((......))))(((((.....(((((((((....((((...((((......))))...))))..)))))))))...((....))..)))))------.... ( -28.80)
>consensus
GGCCACUUUGGGCCGUGCUAAAUCGCACAAAUUGGCAGUUUAAUUGUUCCAAUUGACAUCGAGGCGAGAUUUGUGCCCCGGGUCCCUGGAGUGGCC_CGACUUC
((((((((..((..(........)(((((((((....((((...((((......))))...))))..)))))))))........))..))))))))........ (-31.19 = -31.33 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:34 2006