Locus 1178

Sequence ID 2R_DroMel_CAF1
Location 4,684,146 – 4,684,254
Length 108
Max. P 0.818768
window2063

overview

Window 3

Location 4,684,146 – 4,684,254
Length 108
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 80.74
Mean single sequence MFE -29.02
Consensus MFE -21.15
Energy contribution -21.93
Covariance contribution 0.78
Combinations/Pair 1.31
Mean z-score -1.77
Structure conservation index 0.73
SVM decision value 0.67
SVM RNA-class probability 0.818768
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4684146 108 - 20766785
U-----GUUGAUCUACAUUUU-CAUUUCAUUGACAGACCUCCCAGUCUGGCAUCAUGCACCGCAGCAUACUCGGUCAGCUUCUCCCCGAGGCUAUGGUAUGUUUCCUGGAAAAU
(-----((((((........(-((......)))(((((......)))))..)))).)))(((.(((((((.((...((((((.....)))))).)))))))))...)))..... ( -25.20)
>DroVir_CAF1 4961 114 - 1
CCAAGCCCUGCUCACGAUUUUCCUCUCUCGUUGCAGACCUCGCAGUCGGGCAUUAUGCAUCGCAGUAUUCUGGGCCAGCUGCUGCCCGAGGCUAUGGUGUGCUUCCUGGAGAAC
.......................(((((.(..(((.(((..((..(((((((.((.((..(.(((....))).)...)))).))))))).))...))).)))...).))))).. ( -35.70)
>DroSec_CAF1 6600 103 - 1
----------AUCUUAGUUUU-CAUUUCCUUGACAGACCUCCCAGUCUGGAAUCAUGCACCGCAGCAUACUCGGUCAGCUUCUUCCCGAGGCUAUGGUCUGUUUCCUGGAAAAU
----------...........-..(((((..((((((((....(((((((((....((((((.((....))))))..))...))))..)))))..))))))))....))))).. ( -31.40)
>DroSim_CAF1 7039 108 - 1
A-----CUUGAUCUGAAUUUU-CAUUUCGUUAACAGACCUCCCAGUCUGGAAUCAUGCACCGCAGCAUACUCGGUCAGCUUCUUCCCGAGGCUAUGGUCUGUUUCCUGGAAAAU
.-----...((..(((....)-))..))(..((((((((....(((((((((....((((((.((....))))))..))...))))..)))))..))))))))..)........ ( -28.60)
>DroEre_CAF1 6631 106 - 1
-------AUGAUCCACAUUUU-CAUUUCCUUGGCAGACCUCCCAAUCUGGCAUCAUGCACCGCAGUAUCCUCGGUCAGCUUCUCCCCGAGGCUAUGGUUUGUUUCCUGGAAAAU
-------..............-..(((((..((((((((..........((.....))......(((.((((((..((...))..)))))).)))))))))))....))))).. ( -27.30)
>DroYak_CAF1 6515 103 - 1
----------AUCUACUUUAU-UGUUUCCUUGACAGACCUCCCAAUCUGGCAUCAUGCACCGCAGCAUCCUUGGUCAACUUCUCCCCGAGGCCAUGGUUUGUUUCCUGGAAAAU
----------...........-..(((((..((((((((........((((...((((......)))).(((((...........))))))))).))))))))....))))).. ( -25.90)
>consensus
________UGAUCUACAUUUU_CAUUUCCUUGACAGACCUCCCAGUCUGGCAUCAUGCACCGCAGCAUACUCGGUCAGCUUCUCCCCGAGGCUAUGGUCUGUUUCCUGGAAAAU
........................(((((..((((((((.........(((...((((......)))).....)))((((((.....))))))..))))))))....))))).. (-21.15 = -21.93 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:23 2006