Locus 1176

Sequence ID 2R_DroMel_CAF1
Location 4,682,258 – 4,682,378
Length 120
Max. P 0.648197
window2060

overview

Window 0

Location 4,682,258 – 4,682,378
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.33
Mean single sequence MFE -42.83
Consensus MFE -27.50
Energy contribution -27.58
Covariance contribution 0.09
Combinations/Pair 1.43
Mean z-score -1.59
Structure conservation index 0.64
SVM decision value 0.24
SVM RNA-class probability 0.648197
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4682258 120 - 20766785
CCUCAUCUGGGAUAAUGGAACUCGCGCUCAGCUUAAGGAUUUCCUCGAGCAGCAGCGAACGGCAUCCGCCAAGGAGACGCAUGAGGACAUUGCUCAGGUCUCUGAGCUGGUUUCCAGCUU
....(((((((.(((((...(((((((((.(((..(((....)))..)))..........(((....)))...))).)))..)))..))))))))))))....(((((((...))))))) ( -45.70)
>DroVir_CAF1 3094 120 - 1
UCUCUUUUGGGACAAUGGCACGCGCGCACAGCUCAAGGAUUUCCUGGAGCAGCAGCGCCUGGCAUCCGCCAAAGAGACACACGAGGAUAUUGCACAAGUCUACGAGCUGGUAGCCGGCUU
(((((((.((((...((.((.((((((...((((.(((....))).)))).)).)))).)).))))).).)))))))....((.((((.........)))).))((((((...)))))). ( -42.60)
>DroGri_CAF1 3299 120 - 1
CCUGAUUUGGGACAAUGGGACGCGGGCCCAACUCAAGGAUUUCCUUGAGCAGCAGCGCACUGCAUCCGCCAAGGAAACACACGAGGAUAUUGCCCAGGUCUACGAACUGGUGAACAGCUU
...((((((((.(((((...((((((.....(((((((....)))))))..((((....)))).)))))...(....)......)..)))))))))))))......(((.....)))... ( -42.30)
>DroWil_CAF1 2291 120 - 1
CCUCAUCUGGGAUAAUGGAACAAGAGCUCAGUUGAAGGAUUUCCUAGAGCAGCAACGAUUAGCAUCCGCCAAGGAGACACAUGAGGAUGUUGCUCAGGUGUAUGAACUGGUUUCCAGUUU
...((((((((..............(((..(((..(((....)))..))))))......((((((((..((.(....)...)).))))))))))))))))...(((((((...))))))) ( -34.20)
>DroMoj_CAF1 2938 120 - 1
UCUCAUCUGGGAUAAUGCAACGCGCGCUCAGCUCAAGGACUUUCUUGAGCAGCAGCGUCUGGCCUCCGCCAAAGAGACGCACGAGGACAUUGCUCAGGUCUACGAGCUGGUCUCCAGCUU
....(((((((.((((((..((.((((((.((((((((....)))))))).........((((....))))..))).))).))..).))))))))))))....(((((((...))))))) ( -48.00)
>DroAna_CAF1 7456 120 - 1
CCUCAUUUGGGACAAUGGAACCCGUGCCCAGCUCAAGGACUUCCUCGAGCAGCAGCGUACGGUCUCGGCGAAGGAGACGCACGAGGACAUUGCCCAAGUUUCGGAGCUGGUCUCUACGUU
....(((((((.(((((...(((((((...((((.(((....))).))))...........(((((.......)))))))))).)).))))))))))))...((((.....))))..... ( -44.20)
>consensus
CCUCAUCUGGGACAAUGGAACGCGCGCUCAGCUCAAGGAUUUCCUCGAGCAGCAGCGAACGGCAUCCGCCAAGGAGACACACGAGGACAUUGCUCAGGUCUACGAGCUGGUCUCCAGCUU
....(((((((.(((((....((((((...((((.(((....))).)))).)).))))......(((.....(....)......)))))))))))))))....((((((.....)))))) (-27.50 = -27.58 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:20 2006