Locus 1175

Sequence ID 2R_DroMel_CAF1
Location 4,671,438 – 4,671,540
Length 102
Max. P 0.524328
window2059

overview

Window 9

Location 4,671,438 – 4,671,540
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 89.08
Mean single sequence MFE -38.27
Consensus MFE -30.95
Energy contribution -30.70
Covariance contribution -0.25
Combinations/Pair 1.26
Mean z-score -1.92
Structure conservation index 0.81
SVM decision value -0.02
SVM RNA-class probability 0.524328
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4671438 102 - 20766785
ACGUGGAGCGGCUGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAGGCCAAGAAGGCGGGUCUGUUCAGUAUGGUACACAUCAGGGACA
..(((..((..(((((......))))).((.((....)).)).....))....(((((((((.........))))))))).........))).......... ( -35.70)
>DroSec_CAF1 11263 102 - 1
ACGUGGAGCGGCUGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAGGCCAAGAAGGCGGGCUUGUUCAGUAUGGUGCACAUCAGGGACA
.(.(((.(((.(((((......))))).....)))..((((((....((....(((((((((.........))))))))).)).))))))...))).).... ( -37.90)
>DroSim_CAF1 10634 102 - 1
ACGUGGAGCGGCUGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAGGCCAAGAAGGCGGGCUUGUUCAGUAUGGUGCACAUCAGGGACA
.(.(((.(((.(((((......))))).....)))..((((((....((....(((((((((.........))))))))).)).))))))...))).).... ( -37.90)
>DroEre_CAF1 10658 102 - 1
AUGUGGAGCGGCUGCCUCAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCCGAAGAGCAGGCCAAGAAGGCGGGUCUGUUCAGUAUGGUCCACAUCAGAGACA
(((((((.(((((((((....))))...((.((....)).))....))))...(((((((((.........))))))))).....).)))))))........ ( -44.90)
>DroYak_CAF1 10608 102 - 1
AUGUGGAGCGGCUGCCACAGAAGGCGGAGGAGCGCAAGCGACAGGAGGCGGUUGAGCAGACCAAGAAGGCGGGUCUGUUCAGUAUGGUUCACAUCAGAGACA
(((((((.((((((((......)))...(..((....))..)....)))..(((((((((((.........)))))))))))..)).)))))))........ ( -38.10)
>DroAna_CAF1 12091 102 - 1
AUGUGGAGCGGCUGCCCCAGAAGGCGGAGGAGAAGCAGCGCAAGCAGGCGGAGGAGCGGGUUGAAAAGGCCGGACUGUUCAGCACCGUUCACAUCAAGGACA
(((((.((((((((((......)))))..........((....))..((.(((.(((.((((.....)))).).)).))).)).))))))))))........ ( -35.10)
>consensus
ACGUGGAGCGGCUGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCAGGCCAAGAAGGCGGGUCUGUUCAGUAUGGUGCACAUCAGGGACA
..(((..((..(((((......))))).((.((....)).)).....))....(((((((((.........))))))))).........))).......... (-30.95 = -30.70 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:19 2006