Locus 1174

Sequence ID 2R_DroMel_CAF1
Location 4,652,963 – 4,653,075
Length 112
Max. P 0.682273
window2058

overview

Window 8

Location 4,652,963 – 4,653,075
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.56
Mean single sequence MFE -31.32
Consensus MFE -23.18
Energy contribution -23.43
Covariance contribution 0.26
Combinations/Pair 1.29
Mean z-score -1.74
Structure conservation index 0.74
SVM decision value 0.31
SVM RNA-class probability 0.682273
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4652963 112 - 20766785
AUUUUCGGGGCUAUCCCCGGACACUAACAUUCCCCGAUCGUGGCU--UACUCAGCUGUUCGCAGCGCCAGUUAAUUCGCAACUGAU------UCUUAACUGGUUAUGCAGUUCCAGACCA
...(((((((....)))))))..............(.((.(((..--.(((((((((....))))(((((((((.(((....))).------..)))))))))..)).))).))))).). ( -31.80)
>DroSec_CAF1 7344 112 - 1
AUUUUCGGGGCUAUCCCCGGCCACUCACAUUCCCCGAGCGCGGCU--UACUCAGCUGUUCGCAGCGCCAGUUAAUUCGCAACUGAU------UCUUAACUGGUUAUGCAGUUCCAGACCA
....((((((....))))))...............((((((((((--.....))))))..(((..(((((((((.(((....))).------..)))))))))..))).))))....... ( -34.00)
>DroSim_CAF1 7614 112 - 1
AUUUUCGGGGCUAUCCCCGGCCACUCACAUUCCCCGAGCGCGGCU--UACUCAGCUGUUCGCAGCGCCAGUUAAUUCGCAACUGAU------UCUUAACUGGUUAUGCAGUUCCAGACCA
....((((((....))))))...............((((((((((--.....))))))..(((..(((((((((.(((....))).------..)))))))))..))).))))....... ( -34.00)
>DroEre_CAF1 7545 112 - 1
AUUUUCGGGGCUAUCCCCGGCCACUCACAUUCUCCGCGCACGGCU--UCCUCAGCUGUUCGCAGCGCCAGUUAAUUCGCAACUGAU------UCUUAACUGGUUAUGCCGUUCCAGUCCA
.......(((((.....((((..............(((.((((((--.....)))))).)))...(((((((((.(((....))).------..)))))))))...))))....))))). ( -35.40)
>DroYak_CAF1 7722 112 - 1
AUUUUCGGGGCUAUCCCCGACCACUCACAUUUUCCAAGCGCGGCU--UACUCAGCUGUUCGCAGCGCCAGCUAAUUCGCAACUGAU------UCUUAACUGGUUAUGCAGUUCCAGUCCA
....((((((....)))))).................(.((((((--.....)))))).)(((..(((((.(((.(((....))).------..))).)))))..)))............ ( -27.70)
>DroAna_CAF1 6913 103 - 1
AUUUUCGGGGCUGUCCCC-----------------AAUCGCGGGAUAUUCUCAUCCGCUCUGAGCACCAGGUUAUUUGCAACUGAGACUGCCACUCAACUGGUUUUGCACUUACAGUCUA
....((((((((((((((-----------------....).)))))).........)))))))(((((((((.....))...((((.......)))).)))))...))............ ( -25.00)
>consensus
AUUUUCGGGGCUAUCCCCGGCCACUCACAUUCCCCGAGCGCGGCU__UACUCAGCUGUUCGCAGCGCCAGUUAAUUCGCAACUGAU______UCUUAACUGGUUAUGCAGUUCCAGACCA
....((((((....))))))...................((((((.......))))))..(((..(((((((((....................)))))))))..)))............ (-23.18 = -23.43 +   0.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:18 2006