Locus 1161

Sequence ID 2R_DroMel_CAF1
Location 4,621,270 – 4,621,363
Length 93
Max. P 0.622403
window2037

overview

Window 7

Location 4,621,270 – 4,621,363
Length 93
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 92.25
Mean single sequence MFE -29.45
Consensus MFE -24.27
Energy contribution -25.77
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.82
SVM decision value 0.18
SVM RNA-class probability 0.622403
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4621270 93 + 20766785
AACGGGAGCGGAGAAAAGGCAGCACUCGGUUGCUGACAGUGAUGUCACAGCCCGGCAGCAAAGAAAAGCACACUGAGCUGCUACUGAUGGGAG
..((....)).......((((((.((.(((((.(((((....)))))))))).))..((........)).......))))))........... ( -28.20)
>DroSec_CAF1 10910 93 + 1
AACGGGAGCGGAGAAAAGGCAGCACUCGGUUGCUGACAGUGAUGUCACAGCCCGGCAGCAAAGAAAAGCACACUGAGCUGCUACUGGUGGGAG
..((....)).......((((((.((.(((((.(((((....)))))))))).))..((........)).......))))))........... ( -28.20)
>DroEre_CAF1 11070 90 + 1
AACGGGACCGGAGAAAAGGCAGCACUUGGUUGGUGACAGUGAUGUCACAGCCCGGCAACAAGGAAAAGCACACUGAGCUGCU---GUUAGGAG
..((....)).......(((((((((..((((((((((....))))))..((.(....)..)).....)).))..)).))))---)))..... ( -28.30)
>DroYak_CAF1 10746 90 + 1
AACGGGAGCGGUGAAAAGGCAGCACUCGGUUGCUGACAGUGAUGUCACAGCCCGGCAACAACGAAAAGCACACUGAGCUGCU---GCUAGGAG
..((....)).......(((((((((((((((((((((....)))).......(....).......)))).)))))).))))---)))..... ( -33.10)
>consensus
AACGGGAGCGGAGAAAAGGCAGCACUCGGUUGCUGACAGUGAUGUCACAGCCCGGCAACAAAGAAAAGCACACUGAGCUGCU___GAUAGGAG
..((....)).......((((((....(((((.(((((....))))))))))..((...........)).......))))))........... (-24.27 = -25.77 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:58 2006