Locus 1158

Sequence ID 2R_DroMel_CAF1
Location 4,609,178 – 4,609,298
Length 120
Max. P 0.613844
window2033

overview

Window 3

Location 4,609,178 – 4,609,298
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.94
Mean single sequence MFE -42.80
Consensus MFE -26.17
Energy contribution -25.95
Covariance contribution -0.22
Combinations/Pair 1.31
Mean z-score -1.77
Structure conservation index 0.61
SVM decision value 0.16
SVM RNA-class probability 0.613844
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4609178 120 - 20766785
UGGCUUCGUUUCCUCACAGCAGCCGUGCAAGGCGUGCGUCCUUCUCGAGGGUCUAAAUAGAGGAUUGCCGAAGCUGGGCAUAGGCAAGAAGUCGAAGGGCGAGCGAAUGAUUGCCAAGCA
((((.((((((.(((...((((((......))).)))(((((((.......(((....)))((.(((((...((...))...)))))....)))))))))))).))))))..)))).... ( -43.40)
>DroVir_CAF1 16156 120 - 1
CAGCUUCGUUUCCUCACAGCAGCCGUGCAAGGCGUGCGUGCUGCUGGAGGGACUCAAUCGCGGCCUGCCCAAACUGGGCAUUGGCAAGAAAUCAAAGGGUGAUCGCAUGAUUGCCAAACA
.........((((((.(((((((((..(.....)..)).))))))))))))).....((...((((((((.....)))))..)))..))........((..(((....)))..))..... ( -50.70)
>DroGri_CAF1 13755 120 - 1
CGGCUUCGUUUCCUCUCAGCAGCCAUGCAAGGCAUGCGUUCUGCUGGAGGGACUUAAUCGAGGUUUGCCCAAACUGGGCAUUGGCAAGAAAUCGAAAGGUGAUCGCAUGAUUGCCCAGCA
.(((((((.((((((.((((((..(((((.....))))).))))))))))))......)))))))........(((((((...((.....(((....)))....)).....))))))).. ( -46.00)
>DroWil_CAF1 16338 120 - 1
CGGGUUCGUCUCCUCGCAGCAGCCAUGUAAGGCCUGCGUCUUGCUCGAGGGAUUGAAUCGAGGACUACCAAAGUUGGGAAUUGGUAAGAAGUCCAAAGGUGAUCGAAUGAUUGCCGAACA
..((((((..((((((.(((((..(((((.....))))).)))))))))))..))))))..((((((((((.........)))))....)))))...((..(((....)))..))..... ( -41.30)
>DroMoj_CAF1 13368 120 - 1
UGGCUUUGUCUCCUCGCAGCAGCCAUGCAAGGCAUGUGUGCUCCUAGAAGGACUUAACCGAGGGCUACCCAAACUGGGUAUAGGCAAGAAAUCAAAGGGCGAUCGAAUGAUUGCUAAACA
....((((((((((((..(((..(((((...)))))..)))(((.....)))......)))))..(((((.....))))).))))))).........(((((((....)))))))..... ( -38.30)
>DroAna_CAF1 7749 120 - 1
UGGCUUUGUCUCCUCGCAGCAACCGUGCAAGGCCUGUGUGCUGCUCGAAGGACUGAACAGAGGGCUUCCCAAACUGGGAAUCGGCAAAAAAUCCAAAGGCGAUCGCAUGAUAGCUAAGCA
..((((((((.((((((((((..((.((...)).))..))))))((....)).......))))(.(((((.....))))).))))))).........(((.(((....))).)))..)). ( -37.10)
>consensus
CGGCUUCGUCUCCUCGCAGCAGCCAUGCAAGGCAUGCGUGCUGCUCGAGGGACUGAAUCGAGGACUGCCCAAACUGGGCAUUGGCAAGAAAUCAAAAGGCGAUCGAAUGAUUGCCAAACA
..(((......((((...((((((......))).)))((.((......)).))......))))..(((((.....)))))..)))............(((((((....)))))))..... (-26.17 = -25.95 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:54 2006