Locus 1154

Sequence ID 2R_DroMel_CAF1
Location 4,603,034 – 4,603,130
Length 96
Max. P 0.661181
window2026

overview

Window 6

Location 4,603,034 – 4,603,130
Length 96
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.05
Mean single sequence MFE -24.58
Consensus MFE -10.08
Energy contribution -11.00
Covariance contribution 0.92
Combinations/Pair 1.33
Mean z-score -1.79
Structure conservation index 0.41
SVM decision value 0.27
SVM RNA-class probability 0.661181
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4603034 96 - 20766785
A--AAUGU-------ACUC---------------AAGCCAUGGAAAUGAUUUCAUUGCUUUGAAUGAGAUUAGUUCUAUGAGGACAUGUACCCAGACAUCCACACCUUUAGGCCUCCAAU
.--.....-------....---------------..(((((((((.((((((((((......)))))))))).))))))..(((..(((......)))))).........)))....... ( -21.70)
>DroSec_CAF1 3177 101 - 1
A--AAUGUCG--GAAACUA---------------GAGCCAUGGAAAUGAUUUCAUUGCUUUAAAUGAGAUUCGUUCUAUGUGGACAUGUACCCAGAUACCCACACCUUUAGGCCUCCAAU
.--......(--((..(((---------------(((.(((((((..(((((((((......)))))))))..)))))))(((........)))...........))))))...)))... ( -26.20)
>DroSim_CAF1 3180 101 - 1
A--AAUUUCG--GAGACUA---------------GAGCCAUGGAAAUGAUUUUAUUGCUUUAAAUGAGAUUCGUUCUAUGUGGACAUGUACCCAGAUACCCAUACCUUUAGGCCUCCAAU
.--......(--(((.(((---------------(((..((((.((((((((((((......))))))).))))).(((.(((........))).))).))))..))))))..))))... ( -27.70)
>DroEre_CAF1 3194 116 - 1
A--AAUGUCG--GAAAGUAAUUAAGUAAGUAAUUGAGUAAUAGAUAUGAUUUCAUGGCUUUGAAUGAAAUCCUUUCUAUGACGACAUGCACCCAGGUAUCCACACCUUCAGGCCUCCAGU
.--.((((((--.....((((((......))))))....(((((...((((((((........))))))))...)))))..))))))((....((((......))))....))....... ( -25.40)
>DroYak_CAF1 3197 108 - 1
AAUAAUGUCUUUGGUCCUAACUACCAAA-------AG---U--GGAAGAUUUCAGGGCUUUAAAUGAGAUUCUUUCUAUGACGAUAUCUACCUAGAUAUCCAUACCGCCAGGCCUCCAAU
......(((((((((.......))))))-------.(---(--(((((((((((..........)))))))..)))))))))(((((((....)))))))....((....))........ ( -21.90)
>consensus
A__AAUGUCG__GAAACUA_______________GAGCCAUGGAAAUGAUUUCAUUGCUUUAAAUGAGAUUCGUUCUAUGAGGACAUGUACCCAGAUAUCCACACCUUUAGGCCUCCAAU
......................................(((((((..(((((((((......)))))))))..)))))))........................((....))........ (-10.08 = -11.00 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:47 2006