Locus 1152

Sequence ID 2R_DroMel_CAF1
Location 4,593,749 – 4,593,849
Length 100
Max. P 0.874279
window2024

overview

Window 4

Location 4,593,749 – 4,593,849
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 76.53
Mean single sequence MFE -31.18
Consensus MFE -20.47
Energy contribution -21.50
Covariance contribution 1.03
Combinations/Pair 1.06
Mean z-score -1.59
Structure conservation index 0.66
SVM decision value 0.88
SVM RNA-class probability 0.874279
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4593749 100 - 20766785
GAUAAGGAUGCCCAGGGAACUGGGAUUGGCAAAGCCGCAGAUGGCGAAUGUGGCGAUUCCAGCGCUGCGGGCCUACAAAAAUCGACCUCAA--ACGUUAGUU--
.....(...((((..((..(((((((((.((..((((....)))).....)).)))))))))..))..))))...)...............--.........-- ( -30.20)
>DroPse_CAF1 29938 97 - 1
AAUGAGGAUGCCCAGGGAGCUGGGAUUGGCAAAGCCGCAGAUGGCAAACGUGGCGAUUCCUCCGCUGCGAGCCUAAAAU---U--CAUUGA--GGAUUAGUGAA
(((((((((.(((((....))))))))(((...((((....))))...((..(((.......)))..)).))).....)---)--))))..--........... ( -32.50)
>DroGri_CAF1 35865 96 - 1
AAUGAGUAUGCCCAGGGAGCUGGGAUUGGCGAAGCCACAAAUCGCAAAGGUGGCAAUGCCGGCGCUGCGAACCUGUGCA-UUA--CAUCA---AGGUCAGUU--
..(((((((((.((((..((.(.(.((((((..(((((...........)))))..))))))).).))...)))).)))-.))--).)))---.........-- ( -33.80)
>DroEre_CAF1 31815 100 - 1
GAUAAGGAUGCCCAAGGAACUGGGAUUGGCAAAGCCGCAGAUGGCGAAUGUGGCGAUUCCAGCGCUGCGGGCCUACGAUAAUUGAAAUUUA--UCUUUAGUU--
..(((((((((((..((..(((((((((.((..((((....)))).....)).)))))))))..))..))))...(((...)))......)--))))))...-- ( -33.30)
>DroAna_CAF1 31014 102 - 1
AAUCAGGAUACCCAAAGAACUGGGAUUGGCAAAGCCGCAAAUGGCAAAGGUGGCAAUUCCAGCACUGCGAGCCUACAAUGAUUAACAUAUUUUAGGAUAGUU--
.....((....))..((..(((((((((.((..((((....)))).....)).)))))))))..))((...((((.((((.......)))).))))...)).-- ( -24.80)
>DroPer_CAF1 29859 97 - 1
AAUGAGGAUGCCCAGGGAGCUGGGAUUGGCAAAGCCGCAGAUGGCAAACGUGGCGAUUCCUCCGCUGCGAGCCUAAAAU---U--CAUUGA--GGAUUAGUGAA
(((((((((.(((((....))))))))(((...((((....))))...((..(((.......)))..)).))).....)---)--))))..--........... ( -32.50)
>consensus
AAUGAGGAUGCCCAGGGAACUGGGAUUGGCAAAGCCGCAGAUGGCAAACGUGGCGAUUCCAGCGCUGCGAGCCUACAAU_AUU__CAUUAA__AGGUUAGUU__
..........(((((....)))))...(((...((((....))))....(..(((.......)))..)..)))............................... (-20.47 = -21.50 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:45 2006