Locus 1145

Sequence ID 2R_DroMel_CAF1
Location 4,562,634 – 4,562,729
Length 95
Max. P 0.714517
window2014

overview

Window 4

Location 4,562,634 – 4,562,729
Length 95
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.95
Mean single sequence MFE -39.17
Consensus MFE -22.03
Energy contribution -22.03
Covariance contribution 0.00
Combinations/Pair 1.20
Mean z-score -1.90
Structure conservation index 0.56
SVM decision value 0.38
SVM RNA-class probability 0.714517
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4562634 95 - 20766785
GGGCCGGAUUCGGACUGGGCCUGGCCCUGCUCAUCCUGGUGGCCUACAUCACCGACUACUCACUCAUCCUGAUGGUGAGUGGCAGGCCC---CCCUAA-------
(((((((((..((...((((...))))..)).)))).(((((......)))))(.((((((((.(((....)))))))))))).)))))---......------- ( -41.30)
>DroVir_CAF1 714 101 - 1
GCGCCGGCUUCGGUCUGGGCCUGGCGCUGCUCAUCCUGGUCGCCUACAUAACCGACUAUUCGCUCAUACUGAUGGUGAGUAGCCAGCUG---GCCGGGAUA-GCA
((((((((((......))))).))))).(((.(((((((((((...(......).((((((((.(((....)))))))))))...)).)---)))))))))-)). ( -44.90)
>DroGri_CAF1 1228 102 - 1
GCGCCGGCUUUGGCCUGGGCCUGGCCCUGCUCAUCCUGGUCGCCUACAUAACCGACUACUCGCUCAUACUGAUGGUGAGUGUAAAUGUG---UACCGGAUGGGCA
.....((((..(((....))).))))..((((((((.(((.....(((((....((.((((((.(((....)))))))))))...))))---)))))))))))). ( -41.10)
>DroEre_CAF1 998 98 - 1
GGGCCGGAUUUGGACUGGGCCUGGCCCUGCUCAUCCUGGUGGCCUACAUCACCGACUACUCACUCAUCCUGAUGGUGAGUGGCAGGCCCUAACCCGAU-------
((((((((..((..(.((((...)))).)..))))).(((((......)))))(.((((((((.(((....)))))))))))).))))).........------- ( -41.80)
>DroYak_CAF1 1109 91 - 1
GAGCCGGAUUCGGACUGGGUCUGGCCCUGCUCAUCCUGGUGGCCUACAUCACCGACUACUCACUCAUCCUGAUGGUGAGUGGCGGGCCC-------AG-------
...(((....))).((((((..((((((.........)).)))).......(((.((((((((.(((....))))))))))))))))))-------))------- ( -38.40)
>DroAna_CAF1 922 98 - 1
GCGCCGGAUUCGGUCUCGGUUUGGCCCUUCUCAUCCUGGUGGCCUACAUCACCGACUACUCGCUCAUCCUCAUGGUAAGUGGCCGUCUCGAAACCAAU-------
...........(((.((((..((((((((..(((...(((((......)))))((....))..........)))..))).)))))..)))).)))...------- ( -27.50)
>consensus
GCGCCGGAUUCGGACUGGGCCUGGCCCUGCUCAUCCUGGUGGCCUACAUCACCGACUACUCACUCAUCCUGAUGGUGAGUGGCAGGCCC___CCCGAG_______
..(((((.(((.....))).)))))...........((((((......)))))).((((((((.(((....)))))))))))....................... (-22.03 = -22.03 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:36 2006