| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,538,803 – 4,538,897 |
| Length | 94 |
| Max. P | 0.997723 |
| Location | 4,538,803 – 4,538,897 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 93.33 |
| Mean single sequence MFE | -25.32 |
| Consensus MFE | -22.72 |
| Energy contribution | -23.20 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.90 |
| SVM decision value | 2.92 |
| SVM RNA-class probability | 0.997723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4538803 94 - 20766785 AGCGGCUAUCAAUUUGAUGGUUGCUGUGAUCGUCUCUUGAUUGCUUGCUUAAAUAAAUGUGAGUGUUUAGCCAAUGAAAAGUUGGAA-AAACUAG ((((((((((.....))))))))))(..((((.....))))..)..(((((........)))))((((..(((((.....)))))..-))))... ( -27.80) >DroSec_CAF1 12437 94 - 1 AGCGGCUAUCAAUUUGGUGGUUGCUGUGAUCGUCUCUUGAUUGCUUGCUUAAAUAAAUGUGAGCGUUUAGCCAAUGAAAGGUUGAAA-AAACUAG ((((((((((.....))))))))))(..((((.....))))..)..(((((........))))).(((((((.......))))))).-....... ( -27.70) >DroSim_CAF1 12445 94 - 1 AGCGGCUAUCAAUUUGGUGGUUACUGUGAUCGUCUCGUGAUUGCUUGCUUAAAUAAAUGUGAGCGUUUAGCCAAUGAAAAGUUGAAA-AAACUAG ...((((((((....(..((((.....))))..)...)))..(((..(..........)..)))...))))).......((((....-.)))).. ( -20.70) >DroEre_CAF1 12266 95 - 1 AGCGGCUAUCAACUUUGUGGUUUCUGUGAUCGUCUCUUGAUUGCUUGCUUAAAUAAAUGUAAGCGUUUAGCCAAUGAAAAGUUGGAAAAAACUUG ........((((((((.(((((...(..((((.....))))..)..(((((........)))))....)))))....)))))))).......... ( -22.00) >DroYak_CAF1 12278 94 - 1 AGCGGCUAUCAAUUUUGUGGUUGCUGCGAUCGUCUCUUGAUUGCUAGCUUAAAUAAAUGUAAGCGUUUAGCCAAUGAAAAGUUGGAA-AAACUUG (((((((((.......)))))))))(((((((.....)))))))..(((((........)))))((((..(((((.....)))))..-))))... ( -28.40) >consensus AGCGGCUAUCAAUUUGGUGGUUGCUGUGAUCGUCUCUUGAUUGCUUGCUUAAAUAAAUGUGAGCGUUUAGCCAAUGAAAAGUUGGAA_AAACUAG ((((((((((.....))))))))))(((((((.....)))))))..(((((........)))))((((..(((((.....)))))...))))... (-22.72 = -23.20 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:25 2006