| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,534,991 – 4,535,081 |
| Length | 90 |
| Max. P | 0.754805 |
| Location | 4,534,991 – 4,535,081 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 76.16 |
| Mean single sequence MFE | -41.03 |
| Consensus MFE | -23.98 |
| Energy contribution | -24.48 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.754805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4534991 90 - 20766785 -CAUCCGCGGCC--ACGCCCACCACCUCGGUGACCACGGCCGCCCUUCUCAGCGGCCACCAGCUGCUGCCCUGGCAAACGGCGGCUGCGACGG--------- -....(((((((--.....((((.....)))).....((((((........))))))....((((.(((....)))..)))))))))))....--------- ( -41.00) >DroSec_CAF1 8625 90 - 1 -CAUCCGCGGCC--ACGCCCACCACCUCGGUGACCACGGCCGCCCUUCUUAGCGGCCACCAGCUGCUGCCUUGGCAAACGGCGGCUGCGACGG--------- -....(((((((--.....((((.....)))).....((((((........))))))....((((.(((....)))..)))))))))))....--------- ( -41.00) >DroSim_CAF1 8639 90 - 1 -CAUCCGCGGCC--ACGCCCACCACCUCGGUGACCACGGCCGCCCUUCUUAGCGGCCACCAGCUGCUGCCCUGGCAAACGGCGGCUGCGACGG--------- -....(((((((--.....((((.....)))).....((((((........))))))....((((.(((....)))..)))))))))))....--------- ( -41.00) >DroEre_CAF1 8500 90 - 1 -CAUCUGCGGCC--ACGCCCACCACUUCGGGGACCACGGCCGCCCUCCUCACCGGCCACCAGCUGCUGCCCUGGCAAACGGCAGCGGCGACGG--------- -.....((((((--...(((.........))).....))))))........(((.......(((((((((.(.....).)))))))))..)))--------- ( -35.40) >DroMoj_CAF1 10387 102 - 1 CGAUCGGCGGCGGUGCGCAGAGCUCAACGGCAUCGACGGCGGCGCUGCUAACGGGCCAUCAGCUGGCGCCGUGGCAGACCACCGCCGCCUUUGCCACCCACA .....(((((((((((((.(((((....))).))....)))...((((((.(((((((.....)))).)))))))))..))))))))))............. ( -49.40) >DroAna_CAF1 10007 90 - 1 -C---GGCGGCC--ACGCCCACCACCGGUGGCACCACGGCAGCUCUGCUAACGGGCCAUCAGCUGCUGCCCUGGCAAACGGCGGCCACGUCUGCCA------ -.---(((.(((--..(((.(((...)))))).(((.((((((...(((...........))).)))))).))).....))).)))..........------ ( -38.40) >consensus _CAUCCGCGGCC__ACGCCCACCACCUCGGUGACCACGGCCGCCCUUCUAACCGGCCACCAGCUGCUGCCCUGGCAAACGGCGGCUGCGACGG_________ ......(((......)))................(.((((((((......((((((.....))))))((....))....)))))))).)............. (-23.98 = -24.48 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:23 2006