Locus 1134

Sequence ID 2R_DroMel_CAF1
Location 4,533,133 – 4,533,253
Length 120
Max. P 0.505004
window1999

overview

Window 9

Location 4,533,133 – 4,533,253
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.44
Mean single sequence MFE -47.47
Consensus MFE -35.65
Energy contribution -35.43
Covariance contribution -0.22
Combinations/Pair 1.30
Mean z-score -1.70
Structure conservation index 0.75
SVM decision value -0.06
SVM RNA-class probability 0.505004
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4533133 120 - 20766785
CGAGUUCUUCCUGGGCUGCUGGCUCUCCGGCGGCCUCAUUCAGGGCACCUGCGACGGACUGCUGCGCGGCUGUUGCCACCGCACGGCCAAGUCGGCCAAUCUUGGCAGCUCGGACUUCGU
(((((((.....((((((((((....))))))))))......((((.....((((((.(((.((((.(((....)))..)))))))))..))))((((....)))).)))))))).))). ( -53.50)
>DroVir_CAF1 7791 120 - 1
CGAGUUCUUUUUAGGCUGCUGGAUAUCCGGCGGCCUCAUACAGGGCACCUGCAAUGGAUUGCUGCGCGGCUGUUGCCAUCGCACGGCCAAAUCGGCCAAUUUGCGCAGCUCGGACUAUGU
..(((((.....((((((((((....))))))))))....((..((....))..))....((((((((((....))).......((((.....)))).....)))))))..))))).... ( -54.80)
>DroGri_CAF1 7776 120 - 1
CGAGUUCUUUUUAGGCUGCUGGCUAUCCGGCGGCCUCAUACAAGGCACCUGCAAUGGAUUGCUGCGCGGCUGUUGCCAUCGCACCGCCAAAUCGGCAAAUUUACGAAGCUCGGACUAUAU
((((((......((((((((((....)))))))))).......(((....((((....))))((((.(((....)))..))))..)))...(((.........)))))))))........ ( -42.00)
>DroWil_CAF1 9465 120 - 1
CGAAUUCUUUUUAGGCUGCUGGCUUAGCGGUGGCCUAAUACAAGGCACUUGCAAUGGAUUAUUACGCGGCUGUUGUCAUCGCACAGCAAAAUCAGCGAAUUUACGUAGCUCGGAUCAAAC
.........((..((((((((((.((((.(((((((......)))).((......)).......))).))))..))))((((............))))......))))))..))...... ( -31.70)
>DroMoj_CAF1 8396 120 - 1
CGAGUUCUUUUUAGGCUGCUGGCUAUCUGGCGGCCUAAUACAGGGCACCUGCAAUGGAUUGCUGCGCGGCUGUUGCCAUCGCACGGCCAAAUCGGCUAAUUUGCGCAGCUCGGACUAUGU
((((((((..(((((((((..(....)..)))))))))...))))).((......))...((((((((((....))).......((((.....)))).....))))))))))........ ( -50.90)
>DroAna_CAF1 8174 120 - 1
CGAGUUCUUUUUGGGCUGCUGGCUGUCGGGCGGCCUCAUUCAGGGGACCUGCAACGGACUAUUGCGCGGCUGCUGCCACCGGACGGCCAAGUCGGCCAAUCUGGGCAGCUCGGACUUCGU
(((((((((....((((((((((((((((((((((((.....)))).)).((((.......))))))(((....))).)).))))))).)).))))).....))).))))))........ ( -51.90)
>consensus
CGAGUUCUUUUUAGGCUGCUGGCUAUCCGGCGGCCUCAUACAGGGCACCUGCAAUGGAUUGCUGCGCGGCUGUUGCCAUCGCACGGCCAAAUCGGCCAAUUUGCGCAGCUCGGACUAUGU
(((((((.....((((((((((....))))))))))....((((...))))....)))).(((((..(((....))).......((((.....)))).......))))))))........ (-35.65 = -35.43 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:21 2006