Locus 1132

Sequence ID 2R_DroMel_CAF1
Location 4,530,057 – 4,530,166
Length 109
Max. P 0.544911
window1997

overview

Window 7

Location 4,530,057 – 4,530,166
Length 109
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 80.58
Mean single sequence MFE -30.70
Consensus MFE -16.92
Energy contribution -18.87
Covariance contribution 1.95
Combinations/Pair 1.23
Mean z-score -1.93
Structure conservation index 0.55
SVM decision value 0.02
SVM RNA-class probability 0.544911
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4530057 109 - 20766785
AGCAGACUGACGCCCAUGUUGAUCAGCGACAGUCCGUACACAAUGGAGCUAAAGAUGGUCAACACUGUGGCCAAGUAAUCAUCAUUAGGUAA--UUCCAAGGUUAGUGCUU
(((..((((((((((((((((((((.(...(((((((.....))))).))...).))))))))).)).)))................((...--..))...))))))))). ( -31.40)
>DroSec_CAF1 3791 108 - 1
AGCAGACUGACGCCCAUGUUGAUCAGCGACAGUCCGUACACAAUGGAGCUAAAGAUGGUCAACACUGUGGCCAAGUAAUCAUCAUUAGGUAA--UC-CAAGGUUAGUGCUU
(((..((((((((((((((((((((.(...(((((((.....))))).))...).))))))))).)).)))................((...--.)-)...))))))))). ( -31.40)
>DroSim_CAF1 3784 109 - 1
AGCAGACUGACGCCCAUGUUGAUCAGCGACAGUCCGUACACAAUGGAGCUAAAGAUGGUCAACACUGUGGCCAAGUAAUCAUCAUUAGGUAA--UCCCAAGGUUAGUGAUU
.....((((((((((((((((((((.(...(((((((.....))))).))...).))))))))).)).)))................((...--..))...)))))).... ( -29.70)
>DroEre_CAF1 3753 107 - 1
AGCAGACUGACGCCCAUGUUGAUCAACGAGAGUCCGUACGCAAUGGAACUAAAGAUGGUCAACACUGG-GCCAAGUAAUCAUUACUAGAUG---UCCCAAGGUAAGGGCUC
(((..((((((((((((((((((((.(...(((((((.....)))).)))...).))))))))).)))-))..((((.....))))....)---))....)))....))). ( -33.80)
>DroYak_CAF1 3711 111 - 1
AGCAGACUGACGCCCAUGUUGAUCAGCGACAGUCCGUACACAAUGGAGCUAAAGAUGGUCAACACUGGGGUUAAGUAACCAUUCUUGGGUUAGUGCCUAAGGUUAGUGCUU
(((..((((((.(((((((((((((.(...(((((((.....))))).))...).))))))))).))))..............(((((((....)))))))))))))))). ( -39.60)
>DroAna_CAF1 5235 95 - 1
AGUAGGCUAACGCCCAAGUUGAUCAACGAAAGUCCAUAAGCUAUAGAGCUAAAGAUUCCCAAUACU----------AAUCAGGAAUCAGUAA-----CAAGAAUUUUU-UA
....(((....)))...((((....((....)).....((((....))))...((((((..((...----------.))..))))))..)))-----)..........-.. ( -18.30)
>consensus
AGCAGACUGACGCCCAUGUUGAUCAGCGACAGUCCGUACACAAUGGAGCUAAAGAUGGUCAACACUGUGGCCAAGUAAUCAUCAUUAGGUAA__UCCCAAGGUUAGUGCUU
.....((((((((((((((((((((.(...(((((((.....))))).))...).))))))))).)).)))......(((.......)))...........)))))).... (-16.92 = -18.87 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:19 2006