Locus 1131

Sequence ID 2R_DroMel_CAF1
Location 4,523,372 – 4,523,480
Length 108
Max. P 0.981630
window1996

overview

Window 6

Location 4,523,372 – 4,523,480
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 73.71
Mean single sequence MFE -47.25
Consensus MFE -26.37
Energy contribution -25.73
Covariance contribution -0.64
Combinations/Pair 1.20
Mean z-score -2.23
Structure conservation index 0.56
SVM decision value 1.89
SVM RNA-class probability 0.981630
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4523372 108 + 20766785
CCACUGCGCCGCGACAAGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUGGGAUAGCCCAGAGCAUCGGCUCUUCUGGGCGCUGACAAACAUAUCAGGGCA
.....(((((.......)))))((((((.((((((...))))))..(((((((.(((((....))))).)).)))))..))))))((.((((........)))).)). ( -46.30)
>DroPse_CAF1 72024 90 + 1
CCGCUGCGGCGGGAGAGGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUCGGAUAGCCGAGGCCGGAGAC------------------GCCGGCCAGGGCA
((((....))))....(((.((((((.(.((((((...)))))).).)))))).))).....(((..((((((....------------------.))))))..))). ( -48.10)
>DroEre_CAF1 56943 108 + 1
CCACUGCGCCGCGACAGGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUGGGAUAGCCCAGAGCAUCUGCACUUCUGGGAGCAGACAAACAUAUCAGGGCA
((..((((((.(....))))((((((.(.((((((...)))))).).)))))).(((((....))))).)))(((((.((....)).)))))...........))... ( -43.00)
>DroYak_CAF1 59780 108 + 1
CCACUGCGCCGCGACAAGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUGGGAUAGCCCAGAGCCUCAGCUCUUCUGGGAGCUGACAGAGAUAUCAGUGCA
.....((((........(((((((((.(.((((((...)))))).).)))))).(((((....))))).)))((((((((....))))))))...........)))). ( -49.20)
>DroMoj_CAF1 74267 96 + 1
CCGCUGCGCCGUGACAGCGCAUCCAGUAUGAGCAUGUCGUGCUCCUGCUGAGCUGUCGGAUAGCCCACGGCGCAGACGCUGUUGGGCGU------------GAGCACA
.(((((((((((((((((.....(((((.((((((...)))))).))))).))))))((.....))))))))))).)).......((..------------..))... ( -48.60)
>DroPer_CAF1 75364 90 + 1
CCGCUGCGGCGGGAGAGGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUCGGAUAGCCGAGGCCGGAGAC------------------CCCGGCCAGGGCA
((((....))))....(((.((((((.(.((((((...)))))).).)))))).))).....(((..((((((....------------------.))))))..))). ( -48.30)
>consensus
CCACUGCGCCGCGACAGGGCGUCCAGGAUGAGCAUGUCGUGCUCCUGCUGGGCACUCGGAUAGCCCAGAGCGUAGAC_CUUCUGGG_GC______ACAUAUCAGGGCA
..........((........((((((.(.((((((...)))))).).)))))).(((((....))))).))..................................... (-26.37 = -25.73 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:18 2006