Locus 1125

Sequence ID 2R_DroMel_CAF1
Location 4,508,626 – 4,508,719
Length 93
Max. P 0.905961
window1984

overview

Window 4

Location 4,508,626 – 4,508,719
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 75.07
Mean single sequence MFE -28.37
Consensus MFE -13.33
Energy contribution -13.88
Covariance contribution 0.56
Combinations/Pair 1.15
Mean z-score -2.17
Structure conservation index 0.47
SVM decision value 1.04
SVM RNA-class probability 0.905961
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4508626 93 - 20766785
ACCGCCAGUGGAACGCAAUCCACACGGAAGCCGGCUGAUAGUCUGGCCAGCGGCAGCACCACUGCCAAUGGCACCACAG---------CCACCACAUUGCCA
...((..((((...((..(((....))).)).(((((........((((..(((((.....)))))..))))....)))---------)).))))...)).. ( -33.10)
>DroSec_CAF1 42382 93 - 1
AACGCCAGUGGAACACAAUCCACACGGAAGCCGGCUGAUAGUCUGGCCAGCAGCAGCACCACUGCAAAUGCCACCACAG---------CCACCACAUUGCCA
...((..((((.......(((....)))....(((((......((((.....((((.....))))....))))...)))---------)).))))...)).. ( -26.30)
>DroSim_CAF1 41431 93 - 1
ACCGCCAGUGGAACACAAUCCACACGGAAGCCGGCUGAUAGUCUGGGCAGCAGCAGCACCACUGCAAAUGCCACCACAG---------CCACCACAUUGCCA
.(((...(((((......))))).))).....(((((........((((...((((.....))))...))))....)))---------))............ ( -29.10)
>DroEre_CAF1 42252 102 - 1
ACCGCCAGUGGAACACAAUCCACUCGGAAGCCGGCCGAUAGUCUGGCCAGCAGCAGCACCACUGCAAGUGCCACCACAGCCUCCACAGCCACCACUGCGCCA
...((((((((..(((..(((....))).((.(((((......))))).)).((((.....))))..)))........((.......))..)))))).)).. ( -33.00)
>DroYak_CAF1 45055 84 - 1
ACCGCCAGUGGAACGCAAUCCACACGAAAGCCGGCUGAUGGUCCGGCCACAAGCAGCACCACUGCAAAUGCCA------------------CCACUUCGCCA
...((.(((((...(((............((((((.....).))))).....((((.....))))...)))..------------------)))))..)).. ( -24.90)
>DroAna_CAF1 41719 84 - 1
ACAGUUAGUGGAACCCAGGACACUCGAAAGCCGGCGGAAA------------CAAGCACCACGGUGAAUGUUACGGUCG---CCA---CCACCACCCUGUCC
((((...((((......((.....(....)))(((((.((------------((..(((....)))..))))....)))---)).---...)))).)))).. ( -23.80)
>consensus
ACCGCCAGUGGAACACAAUCCACACGGAAGCCGGCUGAUAGUCUGGCCAGCAGCAGCACCACUGCAAAUGCCACCACAG_________CCACCACAUUGCCA
...(((.(((((......))))).(....)..))).................((((.....))))..................................... (-13.33 = -13.88 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:07 2006