| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,488,986 – 4,489,088 |
| Length | 102 |
| Max. P | 0.733877 |
| Location | 4,488,986 – 4,489,088 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 81.89 |
| Mean single sequence MFE | -23.05 |
| Consensus MFE | -15.41 |
| Energy contribution | -16.17 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.733877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4488986 102 - 20766785 GUUCGUCUUUAACAAUUUGCGGAAGAAUACUUAAGAGCUCUUGAGUGUCUAAUCGUAA-AAAGGCGAAAUGUCUGCAAAUA-UAAAGCCACAAACGAA-UUAUUA (((((((((((...((((((((((((.((((((((....)))))))))))..((((..-....))))....))))))))).-)))))......)))))-)..... ( -28.10) >DroPse_CAF1 37200 105 - 1 GCUCGGCCUUAACGAUUUGCGGAAGAAUACUUAAGAGCACUUGAGUGUCUAAUCAUAAAAAAUGCGAAAUGUUUGCAAAUAAUAAAGCUGCAAGAAAGAUGAUUA ..(((.......)))(((((((.(((.((((((((....)))))))))))............(((((.....)))))..........)))))))........... ( -21.50) >DroEre_CAF1 22924 100 - 1 GCUCGUCUUUAACAAUUUGCGGAAGAAUACUUAAGAGCUCUUGAGUGCCUAAUCGUAA-AAACGCGAAAUGUCCGCAAAU---AAAGCCGCAAACGAA-UUGUUG ((..(.(((((....((((((((....((((((((....)))))))).....((((..-....))))....)))))))))---))))).)).......-...... ( -24.90) >DroMoj_CAF1 29787 102 - 1 ACUAACUUUUAACGAUUGUCGGAAGAAUACUUCAGCGCACUUGAGUGUCGAAUCAUAA-AAAUGCGAAACGUCUGCAAAUAAUAGAGCCACAAAGAGCA-AGUA- (((..(((((...((((.((....))((((((.((....)).))))))..))))....-...((((.......))))...............)))))..-))).- ( -14.20) >DroAna_CAF1 22042 102 - 1 GUUC--UUUUAACGAUUUGCGGAAGAAUACUUAAGAGUACUUGAGUGUCUAAUCGUAA-AAAUACGAAAUGUCUGCAAAUAAUAAAGCUGCAAAAAAAAUCAUUG ((..--(((((...((((((((((((.((((((((....)))))))))))..(((((.-...)))))....)))))))))..)))))..)).............. ( -26.20) >DroPer_CAF1 40218 104 - 1 GCUCGGCCUUAACGAUUUGCGGAAGAAUACUUAAGAGCACUUGAGUGUCUAAUCAUAA-AAAUGCGAAAUGUCUGCAAAUAAUAAAGCUGCAAGAAAGAUGAUUA ...((((.(((...((((((((((((.((((((((....)))))))))))...(((..-..))).......)))))))))..))).))))............... ( -23.40) >consensus GCUCGGCUUUAACGAUUUGCGGAAGAAUACUUAAGAGCACUUGAGUGUCUAAUCAUAA_AAAUGCGAAAUGUCUGCAAAUAAUAAAGCCGCAAAAAAAAUGAUUA ((....(((((...((((((((((((.((((((((....)))))))))))..((...........))....)))))))))..)))))..)).............. (-15.41 = -16.17 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:00 2006