| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,363,003 – 1,363,094 |
| Length | 91 |
| Max. P | 0.646075 |
| Location | 1,363,003 – 1,363,094 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 80.15 |
| Mean single sequence MFE | -30.33 |
| Consensus MFE | -20.08 |
| Energy contribution | -20.38 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1363003 91 + 20766785 CUCCAACAUGUGGACGCUGCAGAUAAAGUUUGUGCAGCGCCGGGAUCACGGCAUGUACGAGUGCCAGGUAAGU----GGG-------AAUGGGAAUGGG----CGG .((((..((.(((((((((((.(.......).))))))((((......))))........)).))).))...)----)))-------............----... ( -28.80) >DroVir_CAF1 92916 80 + 1 CUCCAACAUGUGGACGCUGCAGAUAAAGUUUGUGCAGCGCCGGGAUCACGGCAUGUACGAGUGCCAGGUGAGU----GGG-------GAAA--------------- (((((.(((.(((((((((((.(.......).))))))((((......))))........)).))).)))..)----)))-------)...--------------- ( -33.90) >DroPse_CAF1 1569 88 + 1 CUCCAACAUGUGGACGCUGCAGAUAAAGUUUGUGCAGCGGCGGGAUCACGGCAUGUACGAGUGUCAGGUGAGU----GGG-------CGUGGCACAAGG------- ..((.((((((...(((((((.(.......).))))))).((......))))))))....((((((.((....----..)-------).))))))..))------- ( -31.70) >DroGri_CAF1 84794 98 + 1 CUCCAAUAUGUGGACGCUACAGAUAAAGUUUGUGCAGCGCCGGGAUCACGGCAUGUACGAGUGCCAGGUGAGU----GAGCGUCAGCAAAAAAAAAGAA----AUU ........(((.((((((((..((...(((((((((..((((......)))).)))))))..))...))..))----.)))))).)))...........----... ( -28.60) >DroYak_CAF1 9389 88 + 1 CUCCAACAUGUGGACUUUGCAGAUAAAGUUUGUGCAGCGCCGGGACCACGGCAUGUACGAGUGCCAGGUAAGU----GGG-------AAUGGGAACGAG------- .((((..((.(((((((((....))))))(((((((..((((......)))).)))))))...))).))...)----)))-------..((....))..------- ( -26.20) >DroAna_CAF1 6645 99 + 1 AUCCAACAUGUGGACCUUGCAGAUAAAGUUUGUGCAGCGCCGGGAUCACGGCAUGUACGAGUGCCAGGUAAGUCCUCGGG-------AAGGGGCAGGAGGAAGCGG .(((..(......((((.(((.......((((((((..((((......)))).))))))))))).))))..(((((....-------..))))).)..)))..... ( -32.81) >consensus CUCCAACAUGUGGACGCUGCAGAUAAAGUUUGUGCAGCGCCGGGAUCACGGCAUGUACGAGUGCCAGGUAAGU____GGG_______AAUGGGAAAGAG_______ ..((....(.(((.(((((((.(.......).)))))))))).).....(((((......))))).))...................................... (-20.08 = -20.38 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:41 2006