| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,484,264 – 4,484,375 |
| Length | 111 |
| Max. P | 0.616742 |
| Location | 4,484,264 – 4,484,375 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.84 |
| Mean single sequence MFE | -49.62 |
| Consensus MFE | -19.47 |
| Energy contribution | -19.95 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4484264 111 + 20766785 GACGAAGCCAGGCUUCUUAUGGC------CAUAGCUACCACUGCUG---GUUGGUCUAUGGGCGUAAGCGGGCGUCGAUGCGGUAGCCACCAGCGGAGGCUGAUAGUUGCCCGGGGUUGA .....((((......((((((.(------(((((((((((....))---).))).)))))).))))))((((((.(....((((..((......))..))))...).)))))).)))).. ( -44.10) >DroVir_CAF1 25890 114 + 1 CACAAAGCCGGGCUUCUUGUGGCCACCACCAUAGCUGCUGCU---C---GUCGGCUGUUGAAUGUGUAUGGGCGUCGAGGCGGUGGCAUAGAGGGGUGGCUGAUAGUUGCCCGGCGUGGA (((...(((((((..((...(((((((.((.((((..(((((---(---(.((.((((.........)))).)).))).))))..)).))..)))))))))...))..)))))))))).. ( -57.90) >DroGri_CAF1 20330 109 + 1 --CAAAGCCGGGCUUCUUGUGGCCAC---CAUAGUUGCUAGU---G---CUGGGCUGCUGUAUGUGGAUGGGCGCCGAUGCAGUGGCGAACAAGGGAGGCUGAUAGUUGCCUGGCGUAGA --....(((((((..((...((((.(---(....((((((.(---(---((.(((.(((.(((....))))))))).).))).)))))).....)).))))...))..)))))))..... ( -47.00) >DroSec_CAF1 17690 111 + 1 CACGAAGCCAGGCUUCUUAUGGC------CAUAGCUACCACUGCUG---GUUGGUCUGUGGGCGUAAGCGGGCGUCGAUGCGGUAGCCACCAGCGGUGGCUGAUAGUUGCCCGGGGUCGA ..(((..((......((((((.(------(((((((((((....))---).))).)))))).))))))((((((.....((..((((((((...))))))))...)))))))))).))). ( -49.60) >DroAna_CAF1 17588 111 + 1 CACAAAUCCGGGCUUCUUGUGGC------CAUAGCUUCCACUGCUA---GUGGGCCUUUGAACAUAGACGGGGGUGGAGGCGGUGGCCACCAAGGGAGGCUGGUAGUUGCCGGGAGUGGA (((...(((.(((((((((((((------(((.(((((((((.((.---(((..(....)..)))....)).))))))))).))))))))...))))))))(((....))).)))))).. ( -51.10) >DroPer_CAF1 35440 117 + 1 GACGAAACCAGGCUUCUUGUGGCCUC---CGUAGGUGCCACUGCUGCUUGUGGGUCGGUGUGCGUAGGCUGGCGUCGAUGCAGUUGCCACCAGCGGCGGCUGAUAGUUGCCCGGUGUGGA ..(.(.(((.(((..((...((((.(---(((.((((.((..(((((...(((((((((.(....).)))))).)))..))))))).)))).)))).))))...))..))).))).).). ( -48.00) >consensus CACAAAGCCAGGCUUCUUGUGGC______CAUAGCUGCCACUGCUG___GUGGGCCGGUGAACGUAGACGGGCGUCGAUGCGGUGGCCACCAGCGGAGGCUGAUAGUUGCCCGGCGUGGA ......(((.(((.((....)).........((((((((.(((..........((((............))))......((....))...))).))))))))......))).)))..... (-19.47 = -19.95 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:58 2006