| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,449,341 – 4,449,442 |
| Length | 101 |
| Max. P | 0.533963 |
| Location | 4,449,341 – 4,449,442 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.98 |
| Mean single sequence MFE | -23.26 |
| Consensus MFE | -14.29 |
| Energy contribution | -13.48 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.533963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4449341 101 - 20766785 CUCACGUUGGAAAUUAUUGGAAUGUUGCGAAACUGCUUGCAACAACAAUUCGAUAUACGGUGCUCCCUGUAUGAAAGUGAGUCGAAUGAAAUCAAAUA-AUA--- ............((((((.((.((((((((......))))))))...(((((((.(((.((((.....))))....))).)))))))....)).))))-)).--- ( -23.20) >DroPse_CAF1 6480 99 - 1 CUUACUCUGGAAAUUAUAGGAAUGCUGCGAAAUUGUUUGCAGCAGCAGUUCGACAUACGAUGUACGCUUUAUGAAAGUAAGUAA-CCGAA-----GUGCAUACAG ......(((.............(((((((((....)))))))))(((.((((((((...))))..((((.((....))))))..-.))))-----.)))...))) ( -25.70) >DroSim_CAF1 2920 101 - 1 CUCACGUUGGAAAUUAUUGGAAUGUUGCGAAACUGCUUGCAGCAACAAUUCGAUAUACGAUGCUCCCUGUAUGAGAGUAAGUCAAACGAAAUCAAAUU-AUA--- ....((((.((...(((((((.((((((.............)))))).))))))).....(((((.(.....).)))))..)).))))..........-...--- ( -21.62) >DroEre_CAF1 3134 104 - 1 CUUACGUUGGAAAUUAUUGGAAUGUUGCGAAACUGCUUGCAGCAACAAUUUGAUAUACGAUGCUCCCUCUAUGAGAGUAAGUUGAACGAAAGAAAGUA-AUAUAA (((.((((.((...(((..((.((((((.............)))))).))..))).....(((((.(.....).)))))..)).)))).)))......-...... ( -22.12) >DroYak_CAF1 2570 99 - 1 CUUACGCUGGAAAUUAUUGGAAUGUUGCGAAACUGCUUGCAGCAACAAUUUGAUAUACGAUGCUCUCUCUAUGAGAGUAAGUUGAAA-----AAAAUA-GUAUAA ..((..(((.....(((..((.((((((.............)))))).))..)))..((((((((((.....))))))..))))...-----....))-)..)). ( -23.32) >DroPer_CAF1 7868 99 - 1 CUUACUCUGGAAAUUAUAGGAAUGCUGCGAAAUUGUUUGCAGCAGCAGUUUGACAUACGAUGUACGCUUUAUGAAAGUAAGUAA-CCGAA-----GUGCAUACAG ......(((.............(((((((((....)))))))))(((.((((((((...))))..((((.((....))))))..-.))))-----.)))...))) ( -23.60) >consensus CUUACGCUGGAAAUUAUUGGAAUGUUGCGAAACUGCUUGCAGCAACAAUUCGAUAUACGAUGCUCCCUCUAUGAAAGUAAGUAAAACGAA___AAAUA_AUA_A_ (((((.................((((((((......)))))))).....(((.....)))................)))))........................ (-14.29 = -13.48 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:50 2006