Locus 1106

Sequence ID 2R_DroMel_CAF1
Location 4,427,164 – 4,427,263
Length 99
Max. P 0.881811
window1956

overview

Window 6

Location 4,427,164 – 4,427,263
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 71.77
Mean single sequence MFE -27.47
Consensus MFE -12.40
Energy contribution -12.73
Covariance contribution 0.34
Combinations/Pair 1.50
Mean z-score -1.97
Structure conservation index 0.45
SVM decision value 0.92
SVM RNA-class probability 0.881811
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4427164 99 + 20766785
GCUGUCAACGCCAAGCACCGCCAACAACUCCCCCACCACCACGCCCUGUAGUUCCCGGGCGGCGUCGUACGCCCAGCUGCU---------------------GCACAACAUCUUGCCACA
(((..........)))..............................((((((..(.(((((........))))).)..)))---------------------)))............... ( -20.20)
>DroVir_CAF1 3162 96 + 1
CUUGU------CCAGCAGCACAAACAAUUCACCCACAAAUACGCCAUGCAAUUCGCGUGCCGCUUCCUAUGCGCAGCUGCUG------------------GUCAACAAUAUCAUGCCACA
.(((.------((((((((.........................(((((.....))))).(((.......)))..)))))))------------------).)))............... ( -27.10)
>DroPse_CAF1 4032 117 + 1
GCUGUCAACACCCAGCAGCACCAACAACUCACCCACAACGACGCCAUGCAGCUCGAGGGCAACCUCCUAUGCGCAGCUGCU---CAGUGUACAGAGCUUAGUCCACAAUAUCUUGCCACA
.((((..((((..((((((....................(....).(((.((..((((....))))....)))))))))))---..)))))))).......................... ( -29.70)
>DroEre_CAF1 3370 99 + 1
GCUGUCAACGCCAAGCACCGCCAACAACUCACCCACCACCACGCCCUGCAGCUCCCGGGCGGCAUCCUACGCCCAGCUUCU---------------------GCACAAUAUCUUGCCACA
(((..........)))..............................(((((...(.(((((........))))).)...))---------------------)))............... ( -18.70)
>DroMoj_CAF1 3424 114 + 1
GCUGC------CCAGCAGCACAAACAACUCGCCGACAACGACGCCCAGUAAUUCGCGUGCCGCCUCCUAUGCGCAACUACUGGGCGGUGUCCAGCACUUAGUCAACAAUAUCUUGCCACA
(((((------...)))))...........((.((((....(((((((((.((((((((........)))))).)).))))))))).))))..))......................... ( -37.20)
>DroPer_CAF1 4104 117 + 1
GCUGUCAACACCCAGCAGCACCAACAACUCACCCACAACGACGCCAUGCAGCUCGAGGGCAACCUCCUAUGCGCAGCUGCU---CAGUGUGCAGAGCUUAGUCCACAAUAUCUUGCCACA
(((((.........)))))....................(((((...))(((((((((....))))...((((((.((...---.)))))))))))))..)))................. ( -31.90)
>consensus
GCUGUCAAC_CCCAGCAGCACCAACAACUCACCCACAACGACGCCAUGCAGCUCGCGGGCAGCCUCCUAUGCGCAGCUGCU___________________GUCCACAAUAUCUUGCCACA
(((((.........)))))............................((((((...(((((........)))))))))))........................................ (-12.40 = -12.73 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:41 2006