Locus 1104

Sequence ID 2R_DroMel_CAF1
Location 4,423,289 – 4,423,409
Length 120
Max. P 0.618195
window1953

overview

Window 3

Location 4,423,289 – 4,423,409
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.67
Mean single sequence MFE -46.88
Consensus MFE -25.84
Energy contribution -26.49
Covariance contribution 0.64
Combinations/Pair 1.29
Mean z-score -1.90
Structure conservation index 0.55
SVM decision value 0.17
SVM RNA-class probability 0.618195
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4423289 120 - 20766785
CUUUAAUGGCCGGAAAGACGGUCGACGAGGCCAGGACCGAGCUGUCCAAGGCUGGCCUGUGCGGCAACGAGCUGGAUAACUUGUUGCCCCACAAGGUGUUCGUCGGCAACCGGCCCACAA
.......((((((.......((((((((((((.((((......))))..)))).(((((((.(((((((((........))))))))).))).))))..))))))))..))))))..... ( -57.40)
>DroVir_CAF1 5732 120 - 1
CACUAAUGAUGGGCAAGACCGCCGACCAGGCCAAAGAAGAGCUGUCCAAGGCGGGCUUGUGUGGCAACGAGCUGGACAACUUGUUGCCACACAAGGUGUUUGCCGGCAACAGGCCGACCA
...........((((((.(((((.....((((......).)))......))))).((((((((((((((((........))))))))))))))))...))))))(((.....)))..... ( -53.50)
>DroGri_CAF1 6531 120 - 1
CCUUAAUGAUGGGCAAGACGAGUGAUCAGGCCAGAGAGGAGCUGUCCAAGGCGGGCUUGUGCGGCAACGAGCUGGACAACUUGUUGCCCCACAAAGUCUUUGCCGGCAAUCGGCCAACAA
......((.(((.(.....((....))..(((.....(((....)))..((((((((((((.(((((((((........))))))))).))).))))))..))))))....).))).)). ( -44.60)
>DroWil_CAF1 5936 120 - 1
CUCUAAUGCAGGGCAAGACCGCUGAUCAGGCCCGCGAAGAACUGUCCAAGGCCGGUGUGUGUGGCAAUGAGCUGGAGAACCUCUUGCCCCACAAGGUAUUUGUUGGCAAUCGUCCAACAA
......((..(((((((((((((.((...(((((((....((((.(....).)))).)))).))).)).))).))......))))))))..))......((((((((....).))))))) ( -39.20)
>DroMoj_CAF1 6608 120 - 1
CCCUUAUGAUGGGCAAGACCGCCGAUGAGGCCAAGAAUGAGCUCUCCAAGGCGGGCCUGUGCGGCAACGAGCUGGAAAACUUGUUGCCCCAUAAGGUCUUCGUUGGCAACCGCCCGACCA
.(((((((((((((....(((((...(((((((....)).)).)))...)))))))))))..(((((((((.(....).))))))))).)))))))...(((..(((....))))))... ( -49.40)
>DroAna_CAF1 5576 120 - 1
CCCUCAUGAUGGGCAAGACUAGCGACGAGGCCCGUGCGGAGCUCUCCAAGGCCGGCUUGUGCGGCAAUGAACUGGAUAACUUGCUGCCUCACAAAGUAUUCGUUGGCAAUCGCCCGACGA
......((.(((((....(((((((...((((.....(((....)))..)))).(((((((.((((..((..........))..)))).))).))))..))))))).....))))).)). ( -37.20)
>consensus
CCCUAAUGAUGGGCAAGACCGCCGACCAGGCCAGAGAAGAGCUGUCCAAGGCGGGCUUGUGCGGCAACGAGCUGGACAACUUGUUGCCCCACAAGGUAUUCGUCGGCAACCGGCCGACAA
...........((.......((((((.(((((........(((......))).)))))(((.(((((((((........))))))))).))).........))))))......))..... (-25.84 = -26.49 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:38 2006