Locus 1103

Sequence ID 2R_DroMel_CAF1
Location 4,421,827 – 4,421,919
Length 92
Max. P 0.617365
window1952

overview

Window 2

Location 4,421,827 – 4,421,919
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 78.63
Mean single sequence MFE -28.77
Consensus MFE -18.33
Energy contribution -17.50
Covariance contribution -0.82
Combinations/Pair 1.54
Mean z-score -1.40
Structure conservation index 0.64
SVM decision value 0.17
SVM RNA-class probability 0.617365
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4421827 92 + 20766785
GAGGGAUCAUCCUCUCCGUUGGCCACAAUGGUGUCGGUGAACACUGAAGAGAUCAGGCUGAUGGAGGACAUCUUUU-GCUUUUUCGGAAAGUU
(((((((..(((..(((((..(((....((((.(((((....)))))....)))))))..)))))))).)))))))-((((((...)))))). ( -27.90)
>DroSec_CAF1 4410 92 + 1
GAGGGAUCAUCCUCUCCGUUGGCCACAACGGUGUCAGUGAACACUGAAGAGAUCAGGCUGAUGGAGGACAUCUUUU-GCCUUUUCGGAAAGUU
((((......)))).((((((....))))))..(((((....)))))...((..((((.((((.....))))....-))))..))........ ( -30.00)
>DroSim_CAF1 4332 92 + 1
GAGGGAUCAUCCUCUCCGUUGGCCACAACGGUGUCAGUGAACACUGAAGAGAUCAGGCUGAUGGAGGACAUCUUUU-GCCUUUUCGGAAAGUU
((((......)))).((((((....))))))..(((((....)))))...((..((((.((((.....))))....-))))..))........ ( -30.00)
>DroEre_CAF1 4310 92 + 1
GAAGGAUCAUCCUCUCCACUGACCACAACGGUGUCAGUGAACGCCGAAGAGGUCAUGCUGAUAGAGGACAUCUUUU-GUCUUUUUGGAAAGUU
(((((((..((((((.((((((((.(..((((((......))))))..).))))).).))..)))))).)))))))-.(((....)))..... ( -28.90)
>DroYak_CAF1 4564 92 + 1
GAGGGAUCAUCCUCACCGUUGGCCACAACGGAGUCAGUAAACGCUGAAGAGUCCAUGCUGAUAGAGGACAUCUUUU-GCCUUUUCGGAAAGUU
(((((((..(((((.((((((....)))))).(((((((...(((....)))...))))))).))))).)))))))-.((.....))...... ( -30.00)
>DroPer_CAF1 4102 92 + 1
GUGGUUUCAUGCUCCUCGUCGGCAAUUGUCGUCACUGUAAA-AUCGACCAGAGUAGGCACACUGACCACGGGCUUCGGUUUUUCUGGAAGCUU
((((((...((((.((((.((((....)))).)..((....-..))....)))..))))....))))))(((((((.(......).))))))) ( -25.80)
>consensus
GAGGGAUCAUCCUCUCCGUUGGCCACAACGGUGUCAGUGAACACUGAAGAGAUCAGGCUGAUGGAGGACAUCUUUU_GCCUUUUCGGAAAGUU
(((((((..(((((.((((((....)))))).((((((..................)))))).))))).)))))))................. (-18.33 = -17.50 +  -0.82)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:37 2006