| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,421,079 – 4,421,195 |
| Length | 116 |
| Max. P | 0.750506 |
| Location | 4,421,079 – 4,421,195 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 78.10 |
| Mean single sequence MFE | -45.93 |
| Consensus MFE | -26.86 |
| Energy contribution | -27.82 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.750506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4421079 116 + 20766785 GCUCCGCCCUGCGUUGGCUGCACGCACUGACCUCCACCCACACUAGUGUCUUGAUGUCCGAGGACAAGGAGGCUUUGCGCGAAAAACUAGCCGUUUGCCUCGGCGUGGCGGAGCAG ((((((((.(((...(((..(.((((..(.(((((...(((....)))......((((....)))).))))))..)))).)..((((.....)))))))...))).)))))))).. ( -50.40) >DroEre_CAF1 3561 116 + 1 GCUCUGCCCUGCGUUGGCUGCACAUACUGGCCUCCACCCAUACUAGUGUCUUGAUGUCCGAGGACAAGGAGGCACUGCGCGAAAAACUAGGUGUUUGCCUCGGCGUGGCGGAGCAG ((((((((.(((...(((.((((....(((.......)))...(((((((((..((((....))))..))))))))).............))))..)))...))).)))))))).. ( -48.00) >DroWil_CAF1 3741 116 + 1 CCUGUGGUCUACGUUGGUUACGCAUCCUAGCCUCAACCCACACUAGUGUCCUAAUGUCCGAGGAUAAGGACGCUUUACGUGAUAAAUUGGGCAUUUGCCUCGGCAUUGCAGAGCAG .(((..((...(((.....))).......(((......(((...((((((((..((((....))))))))))))....))).......((((....)))).)))))..)))..... ( -34.50) >DroYak_CAF1 3815 116 + 1 GUUCCGCCCUGCGUUGGCUGCACGCACUGGCCUCAACACACACUAGUGUCUUGAUGUCCGAAGACAAAGAGGCUCUGCGCGAAAAACUGGGCGUUUGUCUCGGUGUGGCGGAGCAG ((((((((.(((((.......)))))(.(((.((((.((((....)))).)))).))).)...(((..(((((...((((..........))))..)))))..))))))))))).. ( -45.40) >DroMoj_CAF1 3532 116 + 1 AAUGUGCUCUGCGCUGGCUACAAACCUUGGCGACAACUCAUACGAGUAUCAUGAUGUCCGAGGAUAAAGAGGAAUUGCGCGAUAAGCUGGGCAUUUGCCUCGGCAUUGCGGAGCAA ....(((((((((...(((.....((((((((.((((((....))))....)).)).)))))).....((((...(((.((......)).)))....)))))))..))))))))). ( -43.10) >DroAna_CAF1 3437 116 + 1 GCUCUGCCCUGCGGUGGCUGAAAGUGCUCGCCUCCACCCACACAAGUGUCCUCAUGUCGGAGGACAAGGAAGCGCUGCGAGAGAAGCUGGGCGUUUGUCUGGGCGUGGCAGAGCAG ((((((((.(((((.(((.((......))))).))..(((.((...(((((((......)))))))...(((((((((.......))..))))))))).)))))).)))))))).. ( -54.20) >consensus GCUCUGCCCUGCGUUGGCUGCACACACUGGCCUCAACCCACACUAGUGUCUUGAUGUCCGAGGACAAGGAGGCUCUGCGCGAAAAACUGGGCGUUUGCCUCGGCGUGGCGGAGCAG ((((((((.(((...(((((.......)))))..............((((((........))))))..(((((...((((..........))))..))))).))).)))))))).. (-26.86 = -27.82 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:36 2006