| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,354,498 – 1,354,618 |
| Length | 120 |
| Max. P | 0.984127 |
| Location | 1,354,498 – 1,354,618 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.25 |
| Mean single sequence MFE | -39.22 |
| Consensus MFE | -38.38 |
| Energy contribution | -38.58 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.984127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1354498 120 + 20766785 AGAGCAACCCGGCGAGGCAUAUGUGCACCGGAGAUGCCGGCAUUGUGUGGUUGCCGUAGCUGAAAGGAUUCAGCGCGUUCAUUCAAAAACCCAUUAACCCUAAUAAGCAGCCACAAAAGG .(.(((.(((((....(((....))).)))).).)))).......((((((((((((.((((((....)))))))))...............((((....))))..)))))))))..... ( -35.50) >DroSec_CAF1 72583 120 + 1 GGAGCAACCCGGCGAGGCAUAUGUGCGCCGGAGAUGCCGGCAUUGUGUGGUUGCCGUAGCUGAAAGGAUUCAGCGCGUUCAUUCAAAAAGCCAUUAACCCUAAUAAGCAGCCACAAAAGC .(.(((.(((((((..((....)).)))))).).)))).((....((((((((((((.((((((....)))))))))...............((((....))))..)))))))))...)) ( -40.50) >DroSim_CAF1 50768 120 + 1 GGAGCAACCCGGCGAGGCAUAUGUGCGCCGGAGAUGCCGGCAUUGUGUGGUUGCCGUAGCUGAAAGGAUUCAGCGCGUUCAUUCAAAAACCCAUUAACCCUAAUAAGCAGCCACAAAAGC .(.(((.(((((((..((....)).)))))).).)))).((....((((((((((((.((((((....)))))))))...............((((....))))..)))))))))...)) ( -40.50) >DroEre_CAF1 53270 120 + 1 AGAGCAACCCGGCGAGGCAUAUGUGCGCCGGAGAUGCCGGCAUUGUGUGGUUGCCGUAGCUGAAAGGAUUCAGCGCGUUCAUUCAAAAACCCAUUAACCCUAAUAAGCAGCCACAAAAGC .(.(((.(((((((..((....)).)))))).).)))).((....((((((((((((.((((((....)))))))))...............((((....))))..)))))))))...)) ( -40.70) >DroYak_CAF1 40508 118 + 1 AGAGCAACCCGGCGGGGCAUAUGUGCGCCGGAGAUGCCGUCAUUGUGUGGUUGCCGUAGCUGAAAGGAUUCAGCGCGUUCAUUCAAAAACCCAUUAACCCUAAUAAGCAGCCACAAAA-- .(.(((.(((((((.(.(....)).)))))).).)))).......((((((((((((.((((((....)))))))))...............((((....))))..)))))))))...-- ( -38.90) >consensus AGAGCAACCCGGCGAGGCAUAUGUGCGCCGGAGAUGCCGGCAUUGUGUGGUUGCCGUAGCUGAAAGGAUUCAGCGCGUUCAUUCAAAAACCCAUUAACCCUAAUAAGCAGCCACAAAAGC .(.(((.(((((((..((....)).)))))).).)))).......((((((((((((.((((((....)))))))))...............((((....))))..)))))))))..... (-38.38 = -38.58 + 0.20)
| Location | 1,354,498 – 1,354,618 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.25 |
| Mean single sequence MFE | -39.36 |
| Consensus MFE | -37.82 |
| Energy contribution | -38.06 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1354498 120 - 20766785 CCUUUUGUGGCUGCUUAUUAGGGUUAAUGGGUUUUUGAAUGAACGCGCUGAAUCCUUUCAGCUACGGCAACCACACAAUGCCGGCAUCUCCGGUGCACAUAUGCCUCGCCGGGUUGCUCU ......(((((((......((((((..((.((((......)))).))...))))))..)))))))(((((((.......(((((.....)))))(((....))).......))))))).. ( -38.40) >DroSec_CAF1 72583 120 - 1 GCUUUUGUGGCUGCUUAUUAGGGUUAAUGGCUUUUUGAAUGAACGCGCUGAAUCCUUUCAGCUACGGCAACCACACAAUGCCGGCAUCUCCGGCGCACAUAUGCCUCGCCGGGUUGCUCC ......(((((((......((((((...(((.(((.....))).)).)..))))))..)))))))(((((((.......(((((.....)))))(((....))).......))))))).. ( -38.60) >DroSim_CAF1 50768 120 - 1 GCUUUUGUGGCUGCUUAUUAGGGUUAAUGGGUUUUUGAAUGAACGCGCUGAAUCCUUUCAGCUACGGCAACCACACAAUGCCGGCAUCUCCGGCGCACAUAUGCCUCGCCGGGUUGCUCC ......(((((((......((((((..((.((((......)))).))...))))))..)))))))(((((((.......(((((.....)))))(((....))).......))))))).. ( -40.90) >DroEre_CAF1 53270 120 - 1 GCUUUUGUGGCUGCUUAUUAGGGUUAAUGGGUUUUUGAAUGAACGCGCUGAAUCCUUUCAGCUACGGCAACCACACAAUGCCGGCAUCUCCGGCGCACAUAUGCCUCGCCGGGUUGCUCU ......(((((((......((((((..((.((((......)))).))...))))))..)))))))(((((((.......(((((.....)))))(((....))).......))))))).. ( -40.90) >DroYak_CAF1 40508 118 - 1 --UUUUGUGGCUGCUUAUUAGGGUUAAUGGGUUUUUGAAUGAACGCGCUGAAUCCUUUCAGCUACGGCAACCACACAAUGACGGCAUCUCCGGCGCACAUAUGCCCCGCCGGGUUGCUCU --...(((((.((((.............(.((((......)))).)((((((....))))))...)))).))))).......((((.(.((((((((....)))...)))))).)))).. ( -38.00) >consensus GCUUUUGUGGCUGCUUAUUAGGGUUAAUGGGUUUUUGAAUGAACGCGCUGAAUCCUUUCAGCUACGGCAACCACACAAUGCCGGCAUCUCCGGCGCACAUAUGCCUCGCCGGGUUGCUCU ......(((((((......((((((..((.((((......)))).))...))))))..)))))))(((((((.......(((((.....)))))(((....))).......))))))).. (-37.82 = -38.06 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:38 2006