Locus 11

Sequence ID 2R_DroMel_CAF1
Location 943,455 – 943,575
Length 120
Max. P 0.585279
window23

overview

Window 3

Location 943,455 – 943,575
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -29.33
Consensus MFE -24.85
Energy contribution -24.63
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.10
Structure conservation index 0.85
SVM decision value 0.10
SVM RNA-class probability 0.585279
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 943455 120 - 20766785
UAAUCAACAUAGACUCCGGAUCUUGGCCUGUGUUAACAGCCAAGCGUCCAGGAUAUCUCUCUGCUGCAUCUUCAUGCAACCAAUCACUGAUAAGCAUUAUAUGUGUUGUUAAAUCAAAAU
(((.(((((((...(((((((((((((.(((....))))))))).)))).)))........((((((((....))))...((.....))...)))).....))))))))))......... ( -31.00)
>DroSim_CAF1 54765 120 - 1
UAAUCAACAUAGACUCCGGAUCUUGGCCUGUGUUAACAGCCAAACGUCCAGGAUAGCGCUCUGCCGCAUCUUCAUGCAACCAAUCACUGAUAAGCAUUAUAUGUGUUGUUAAAUCAAAAU
(((.(((((((...(((((((.(((((.(((....))))))))..)))).)))..((((...)).((((....))))................))......))))))))))......... ( -27.10)
>DroEre_CAF1 137211 120 - 1
UAAUCAACAUGGACUCCGGAUCUUGGCCUGUGUUAACAGCCAAACGUCCUGGAUAUCGCUCGGCUGCAUCUUCAUGCAACCAAUCACUGAUAAGCAUUAUAUGUGUUGUUAAAUCAAAAU
(((.((((((....(((((((.(((((.(((....))))))))..)))).)))....(((.((.(((((....))))).)).(((...))).))).......)))))))))......... ( -29.90)
>consensus
UAAUCAACAUAGACUCCGGAUCUUGGCCUGUGUUAACAGCCAAACGUCCAGGAUAUCGCUCUGCUGCAUCUUCAUGCAACCAAUCACUGAUAAGCAUUAUAUGUGUUGUUAAAUCAAAAU
(((.(((((((...(((((((.(((((.(((....))))))))..)))).))).........((.((((....))))...((.....))....))......))))))))))......... (-24.85 = -24.63 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:22 2006