Locus 1099

Sequence ID 2R_DroMel_CAF1
Location 4,410,873 – 4,410,963
Length 90
Max. P 0.784911
window1944

overview

Window 4

Location 4,410,873 – 4,410,963
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 88.96
Mean single sequence MFE -33.92
Consensus MFE -29.02
Energy contribution -29.50
Covariance contribution 0.48
Combinations/Pair 1.27
Mean z-score -1.86
Structure conservation index 0.86
SVM decision value 0.57
SVM RNA-class probability 0.784911
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4410873 90 + 20766785
UCAACUCAUCCACUGGCUGGCGCAAGUAUUUCAGCGCCAGCUCGUUCAUCACCAUGCUCUUCUCGGUGUUGGGCUUGGCCAGUUGAGGGA
((((((...(((..(((((((((..........))))))))).(((((.((((...........)))).))))).)))..)))))).... ( -34.60)
>DroSec_CAF1 20834 90 + 1
UCAGCUCGUCCACGGGCUGGCGCAAGUAUUUCAACGCCAGCUCGUUCAUCACCAGGCUCUUCUCGGUGUUGGGCUUGGCCAGUUGGGGGA
.(((((((....)))))))((....)).(..(((((((((((((.....(((((((....))).)))).))))).))))..))))..).. ( -36.80)
>DroSim_CAF1 21141 90 + 1
UCAGCUCGUCCACGGGCUGCCGCAAGUACUUCAGCGCCAGCUCGUUCAUCACCAGGCUCUUCUCGGUGUUGGGCUUGGCUAGUUGGGGGA
.(((((((....))))))).(....)..((((((((((((((((.....(((((((....))).)))).))))).))))..))))))).. ( -35.50)
>DroEre_CAF1 22482 90 + 1
UCAGCUCAUCCACGGGUUGGCGCAAGUACUUCAGCGCCAGCUCGUUCAUCACCAGGCUCUUUUCGGUGUUUGGCUUGGCCAGUUGAGGGA
((((((...((((((((((((((..........))))))))))))......((((((.((....)).))))))...))..)))))).... ( -35.00)
>DroYak_CAF1 20284 90 + 1
UCAGCUCAUCAACGGGUUGGCGCAAAUACUUCAGCGCCAGCUCGUUCAUCACCAAGCUCUUCUCGGUGUUUGGCUUGGCCAGUUGAGGGA
((((((....(((((((((((((..........))))))))))))).....(((((((...(.....)...)))))))..)))))).... ( -36.20)
>DroAna_CAF1 23420 90 + 1
UCAGUUCGUCCACUGGCUGUCGCAGGUACUUUAGCGCCAACUCAUUCAUGACCAUGCUCUUCUCAGUGUUUGGCUUGGCGAGCUGAGGAA
((((((((.(((...((((..(......)..))))(((((..((((...((.........))..)))).))))).))))))))))).... ( -25.40)
>consensus
UCAGCUCAUCCACGGGCUGGCGCAAGUACUUCAGCGCCAGCUCGUUCAUCACCAGGCUCUUCUCGGUGUUGGGCUUGGCCAGUUGAGGGA
((((((.....((((((((((((..........))))))))))))......(((((((...(.....)...)))))))..)))))).... (-29.02 = -29.50 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:30 2006