Locus 1098

Sequence ID 2R_DroMel_CAF1
Location 4,408,899 – 4,409,009
Length 110
Max. P 0.684900
window1943

overview

Window 3

Location 4,408,899 – 4,409,009
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 83.83
Mean single sequence MFE -45.32
Consensus MFE -34.57
Energy contribution -34.80
Covariance contribution 0.23
Combinations/Pair 1.22
Mean z-score -1.98
Structure conservation index 0.76
SVM decision value 0.31
SVM RNA-class probability 0.684900
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4408899 110 - 20766785
AGCUGGCAUUGCUGAGUGGGCGCGGUGGUUGGGCCAGGGGCUCUGGUUUCACAGGCUGCGGAUUGAAUAUCUGCGGCGGAGCCUGAGGCUGCUGGGCUCCUGGGUAGCUU
....(((..((((.((.((((.((((.....((((..((((((((......)..(((((((((.....))))))))))))))))..)))))))).)))))).))))))). ( -50.90)
>DroSec_CAF1 18861 110 - 1
AGCUGGCAUUGCUGAGUGGGCGCGGUGGUUGGGCUAGGGGCUCUGGUUUCACAGGCUGCGGAUUGAAUAUCUGUGGCGGAGCCUGAGGCUGCUGGCUUCCUGGGUAGCUU
....(((..((((.((..(((.(((..((((((((.(..((....))..)....((..(((((.....)))))..))..)))))..)))..))))))..)).))))))). ( -45.80)
>DroSim_CAF1 18730 110 - 1
AGCUGGCAUUGCUGAGUGGGCGCGGUGGUUGGGCUAGGGGCUCUGGCUUUACAGGCUGCGGAUUGAAUAUCUGUGGCGGAGCCUGAGGCUGCUGGGCUCCUGGGUAGCUU
....(((..((((.((.((((.(((..((((((((.(((((....)))))....((..(((((.....)))))..))..)))))..)))..))).)))))).))))))). ( -47.20)
>DroEre_CAF1 20536 110 - 1
AGCUGGCGUUGCUGAGUGGGCGCGGUGGUUGGGCCAAAGGCUCUGGUUUCACAGGCUGCGGAUUAAAUAUCUGCGGCGGAGGUUGAGGCUGCUGGGCUCCUGGGUAUGUU
....(((((.(((.((.((((.(((..(((.((((.......(((......)))(((((((((.....)))))))))...))))..)))..))).)))))).)))))))) ( -47.00)
>DroYak_CAF1 18892 104 - 1
AGCUGGCGUUGCUGAGUGGGCGCGGUGGUUGGGCCAAAGGCUCUGGUUUCACAGGCUGCGGAUUGAAGAUCUGCGGCGGU------GGCAGCUGGGCUCCUGGGUAUGCU
....(((((.(((.((.((((.((((.((.(((((...)))))......(((..((((((((((...)))))))))).))------))).)))).)))))).)))))))) ( -46.40)
>DroPer_CAF1 18758 101 - 1
AGCUGGCGUUGCUGAGAGGCCGGGGUGGGUGAUUCAGAGGUUCUUGCUUAACUGGCUGCGGAUUAAAUAUCUGUGG---------AGCCGGCUGGGACACUGGAUACGUU
.(((.((.(((((....)).))).)).))).((((((..(((((.(((.....((((((((((.....))))))..---------))))))).))))).))))))..... ( -34.60)
>consensus
AGCUGGCAUUGCUGAGUGGGCGCGGUGGUUGGGCCAGAGGCUCUGGUUUCACAGGCUGCGGAUUGAAUAUCUGCGGCGGAGCCUGAGGCUGCUGGGCUCCUGGGUAGCUU
.........((((.((.((((.(((((((((((((...)))))...........(((((((((.....))))))))).........)))))))).)))))).)))).... (-34.57 = -34.80 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:29 2006