Locus 1097

Sequence ID 2R_DroMel_CAF1
Location 4,407,597 – 4,407,697
Length 100
Max. P 0.500000
window1942

overview

Window 2

Location 4,407,597 – 4,407,697
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.83
Mean single sequence MFE -23.45
Consensus MFE -15.34
Energy contribution -14.90
Covariance contribution -0.44
Combinations/Pair 1.19
Mean z-score -1.46
Structure conservation index 0.65
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4407597 100 + 20766785
AGAGCGACUCUUCUGAGGUCGAGUGUGAUCAGAGUACUAACUAUAGCACCGAUAAUUCGGUAAGAGCUUACAUGCCAGGCUCUUAAUCGAG----GCCAACAAA
.(.((..(((....)))((((.((((......(((....)))...))))))))..((((((((((((((.......)))))))).))))))----)))...... ( -27.80)
>DroPse_CAF1 17487 99 + 1
AGAGCGACUCUUCUGAAGUUGAGUGCGAUCAGAGUACAAAUUAUAGCACCGAUAAUUCGGUAAGACUAGAGAUUUAAGAUUAGCAAA-GAA----UAGAAAAGA
.......((.((((...(((((((((.......))))(((((.(((((((((....)))))..).)))..)))))....)))))..)-)))----.))...... ( -18.50)
>DroEre_CAF1 17670 100 + 1
AGAGCGACUCUUCUGAGGUUGAGUGUGAUCAGAGUACAAACUAUAGCACCGAUAAUUCGGUAAGAGCUUACAUGCAAGGCUCUUAAUCAAA----GCCAACGUA
...((..(((....)))((((.((.((((..................(((((....)))))((((((((.......)))))))).))))..----)))))))). ( -24.60)
>DroYak_CAF1 17609 100 + 1
AGAGCGACUCUUCUGAGGUUGAGUGUGAUCAGAGUACAAACUAUAGCACCGAUAAUUCGGUAAGAGCUUACAUUCAAGGCUCUUAAUCGAA----GCCAAAAAA
.(.((..(((....)))((((.((((......(((....)))...))))))))..((((((((((((((.......)))))))).))))))----)))...... ( -26.40)
>DroAna_CAF1 20255 104 + 1
AGAGCGACUCUUCGGAGGUCGAGUGCGAUCAGAGUACUAAUUAUAGCACCGAUAAUUCGGUAAGAGCUAAGAUGCUAAACUCAUAAUCUAAUUUGGAAAUUAAA
.(((((((((....)).))))(((((.......))))).(((.(((((((((....)))))....)))).)))......)))...................... ( -24.90)
>DroPer_CAF1 17489 99 + 1
AGAGCGACUCUUCUGAAGUUGAGUGCGAUCAGAGUACAAAUUAUAGCACCGAUAAUUCGGUAAGACUAGAGAUUUAAGAUUAGCAAA-GAA----UAGAAAAGA
.......((.((((...(((((((((.......))))(((((.(((((((((....)))))..).)))..)))))....)))))..)-)))----.))...... ( -18.50)
>consensus
AGAGCGACUCUUCUGAGGUUGAGUGCGAUCAGAGUACAAACUAUAGCACCGAUAAUUCGGUAAGAGCUUACAUGCAAGACUCUUAAUCGAA____GACAAAAAA
.......((((((((((((((.((((......(((....)))...))))))))..))))).)))))...................................... (-15.34 = -14.90 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:28 2006