Locus 1096

Sequence ID 2R_DroMel_CAF1
Location 4,407,007 – 4,407,108
Length 101
Max. P 0.708589
window1941

overview

Window 1

Location 4,407,007 – 4,407,108
Length 101
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.89
Mean single sequence MFE -27.62
Consensus MFE -18.44
Energy contribution -18.72
Covariance contribution 0.28
Combinations/Pair 1.15
Mean z-score -1.92
Structure conservation index 0.67
SVM decision value 0.37
SVM RNA-class probability 0.708589
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4407007 101 - 20766785
GGUGGUUAGCUGUUGGACCUUGACCGUUUUCGAGGUUCCAUUGAAACUGACCAACUUGCCACCGAACUAAAAACGAAGAAA---UUGAUUU-UUAAAUAGGUUUA
(((((((((....((((((((((......)))))).))))......)))))).....)))(((....((((((..((....---))..)))-)))....)))... ( -25.80)
>DroVir_CAF1 16431 101 - 1
GGUUGUUAGCUGGGAUACCUUCACAGUUUUCGAUGUUGCGUUGAAACUAACCAGCUUGCCGCCGAACUGUUAAUGAAAUUGUAAUUAAU-U-GGGCACA--GUUC
(((.((.((((((((.....))..(((((.(((((...))))))))))..)))))).)).)))(((((((......(((((....))))-)-....)))--)))) ( -29.80)
>DroSec_CAF1 16977 101 - 1
GGUGGUUAGCUGUUGGACCUUGACCGUUUUCGAGGUUCCAUUGAAGCUGACCAACUUGCCACCGAACUAAAAACGAAAAAA---AUUAUUU-UUAAAUAGGGUUA
(((((((((((..((((((((((......)))))).))))....)))))))).....))).((....((((((..(.....---.)..)))-)))....)).... ( -30.60)
>DroSim_CAF1 16847 101 - 1
GGUGGUUAGCUGUUGGACCUUGACCGUUUUCGAGGUUCCAUUGAAGCUGACCAACUUGCCACCGAACUAAAAACGAAAAAA---UGGAUUU-UUAAAUAGGGUUA
(((((((((((..((((((((((......)))))).))))....)))))))).....))).((....(((((((.(.....---).).)))-)))....)).... ( -29.50)
>DroEre_CAF1 17081 101 - 1
GGUGGUUAGCUGUUGGACCUUGAUGGUUUUCGAGGUUCCAUUGAAACUGACCAACUUACCACCAAACUGAAAUCGGAAAAU---GUGAUUU-UUAAAUAGAUUUA
((((((.....((((((((((((......)))))))((....))......)))))..))))))......(((((.((((((---...))))-)).....))))). ( -26.10)
>DroYak_CAF1 17013 102 - 1
GGUGGUUAGCUGUUGGACCUUGACCGUUUUCGAGGUUCCAUUAAAACUGACCAACUUGCCACCAAACUAAAAACGGAAAAG---GUGAUUUGAUUAAUAGGUUAA
..(((((((....((((((((((......)))))).))))......)))))))......((((.................)---))).................. ( -23.93)
>consensus
GGUGGUUAGCUGUUGGACCUUGACCGUUUUCGAGGUUCCAUUGAAACUGACCAACUUGCCACCGAACUAAAAACGAAAAAA___UUGAUUU_UUAAAUAGGGUUA
((((((.((.((.((((((((((......)))))).))))...........)).)).)))))).......................................... (-18.44 = -18.72 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:27 2006